1. Academic Validation
  2. Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates

Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates

  • J Med Chem. 2022 Dec 22;65(24):16234-16251. doi: 10.1021/acs.jmedchem.2c00766.
Mihirbaran Mandal 1 Li Xiao 2 Weidong Pan 1 Giovanna Scapin 2 Guoqing Li 1 Haiqun Tang 1 Shu-Wei Yang 1 Jianping Pan 1 Yuriko Root 1 Reynalda Keh de Jesus 1 Christine Yang 1 Winnie Prosise 2 Priya Dayananth 3 Asra Mirza 4 Alex G Therien 4 Katherine Young 4 Amy Flattery 5 Charles Garlisi 3 Rumin Zhang 3 Donald Chu 3 Payal Sheth 3 Inhou Chu 6 Jin Wu 6 Carrie Markgraf 7 Hai-Young Kim 2 Ronald Painter 3 Todd W Mayhood 3 Edward DiNunzio 3 Daniel F Wyss 2 Alexei V Buevich 8 Thierry Fischmann 2 Alexander Pasternak 1 Shuzhi Dong 1 Jacqueline D Hicks 1 Artjohn Villafania 3 Lianzhu Liang 5 Nicholas Murgolo 4 Todd Black 4 William K Hagmann 1 Jim Tata 1 Emma R Parmee 1 Ann E Weber 1 Jing Su 1 Haifeng Tang 1
Affiliations

Affiliations

  • 1 Medicinal Chemistry, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 2 Computational and Structural Chemistry, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 3 In-vitro biology, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 4 Antibacterial/antifungal, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 5 In vivo biology, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 6 Pharmacokinetics, Pharmacodynamics, and Drug Metabolism, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 7 Nonclinical Drug Safety, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
  • 8 Analytical Research and Development, Merck & Co., Inc., Kenilworth, New Jersey07033, United States.
Abstract

With the emergence and rapid spreading of NDM-1 and existence of clinically relevant VIM-1 and IMP-1, discovery of pan inhibitors targeting metallo-beta-lactamases (MBLs) became critical in our battle against Bacterial infection. Concurrent with our fragment and high-throughput screenings, we performed a knowledge-based search of known metallo-beta-lactamase inhibitors (MBLIs) to identify starting points for early engagement of medicinal chemistry. A class of compounds exemplified by 11, discovered earlier as B. fragilis metallo-beta-lactamase inhibitors, was selected for in silico virtual screening. From these efforts, compound 12 was identified with activity against NDM-1 only. Initial exploration on metal binding design followed by structure-guided optimization led to the discovery of a series of compounds represented by 23 with a pan MBL inhibition profile. In in vivo studies, compound 23 in combination with imipenem (IPM) robustly lowered the Bacterial burden in a murine Infection model and became the lead for the invention of MBLI clinical candidates.

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