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  2. MBD3 - methyl-CpG binding domain protein 3 Gene

MBD3 - methyl-CpG binding domain protein 3 Gene

中文名称:甲基-CpG 结合域蛋白 3

种属: Homo sapiens

基因 ID: 53615 | 基因类型: protein coding

关于 MBD3

Cytogenetic location: 19p13.3 Genomic coordinates (GRCh38): 19:1,573,596-1,592,865 (from NCBI)

This gene has 11 transcripts (splice variants), 234 orthologues and 8 paralogues. Ubiquitous expression in placenta (RPKM 23.4), fat (RPKM 18.3) and 25 other tissues.

功能概要

DNA 甲基化是真核生物基因组的主要修饰,在哺乳动物发育中起着至关重要的作用。该基因属于核蛋白家族,其特征在于存在甲基-CpG 结合域 (MBD) 。编码的蛋白质是 NuRD 的一个亚基,NuRD 是一种多亚基复合物,包含核小体重塑和组蛋白脱乙酰酶活性。与其他家族成员不同,编码的蛋白质不能与甲基化 DNA 结合。该蛋白介导转移相关蛋白 2 与核心组蛋白脱乙酰酶复合物的结合。可变剪接导致该基因的多个转录变体。[RefSeq 提供,2013 年 7 月]

DNA methylation is the major modification of eukaryotic genomes and plays an essential role in mammalian development. This gene belongs to a family of nuclear proteins which are characterized by the presence of a methyl-CpG binding domain (MBD). The encoded protein is a subunit of the NuRD, a multisubunit complex containing nucleosome remodeling and histone deacetylase activities. Unlike the other family members, the encoded protein is not capable of binding to methylated DNA. The protein mediates the association of metastasis-associated protein 2 with the core histone deacetylase complex. Alternative splicing results in multiple transcript variants of this gene. [provided by RefSeq, Jul 2013]

MBD3 基因产物(2)

mRNA Protein Name
NM_001281453.2 NP_001268382.1 methyl-CpG-binding domain protein 3 isoform 1
NM_001281454.2 NP_001268383.1 methyl-CpG-binding domain protein 3 isoform 2
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables methyl-CpG binding IDA
IDA: 通过直接分析推断
24307175 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
12183469 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in chromatin remodeling IDA
IDA: 通过直接分析推断
9790534 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of NuRD complex IDA
IDA: 通过直接分析推断
33283408 GOA
located in nucleus IDA
IDA: 通过直接分析推断
15701600 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

MBD3 蛋白结构

MBD

MBD: Methyl-CpG binding domain (1 - 69)

MBD_C

MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3 (150 - 243)

  • 0
  • 100
  • 200
  • 291 a.a.
蛋白主名 其他名称

methyl-CpG-binding domain protein 3

MBD3 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra MBD3 O95983 ZNF277 Homo sapiens Q8WWA6
Y2H Prey Pooling
25416956
Intra MBD3 O95983 ZNF277 Homo sapiens Q8WWA6
Validated Y2H
25416956
Intra MBD3 O95983 ZNF277 Homo sapiens Q8WWA6
Y2H Array
25416956
Intra MBD3 O95983 ICA1 Homo sapiens Q05084
Validated Y2H
25416956
Intra MBD3 O95983 ICA1 Homo sapiens Q05084
Y2H Array
25416956
Intra MBD3 O95983 TRIM54 Homo sapiens Q9BYV2
Y2H Prey Pooling
25416956
Intra MBD3 O95983 HDAC1 Homo sapiens Q13547
Pull Down
25123934
Intra MBD3 O95983 HDAC1 Homo sapiens Q13547
Anti Tag CoIP
24048479
Intra MBD3 O95983 HDAC1 Homo sapiens Q13547
Crosslink
25123934
Intra MBD3 O95983 MYC Homo sapiens P01106
Anti Tag CoIP
24048479
Intra MBD3 O95983 POU5F1 Homo sapiens Q01860
Anti Tag CoIP
24048479
Intra MBD3 O95983 SOX2 Homo sapiens P48431
Anti Tag CoIP
24048479
Intra MBD3 O95983 GOLGA2 Homo sapiens Q08379
Validated Y2H
25416956
Intra MBD3 O95983 GOLGA2 Homo sapiens Q08379
Y2H Prey Pooling
25416956
Intra MBD3 O95983 GOLGA2 Homo sapiens Q08379
Y2H Array
25416956
Intra MBD3 O95983 KDM1A Homo sapiens O60341
Y2H
23455924
Intra MBD3 O95983 KLF4 Homo sapiens O43474
Anti Tag CoIP
24048479
Intra MBD3 O95983 SDCBP Homo sapiens O00560
Validated Y2H
25416956
Intra MBD3 O95983 KRT15 Homo sapiens P19012
Y2H Array
25416956
Intra MBD3 O95983 KRT15 Homo sapiens P19012
Y2H Prey Pooling
25416956
Intra MBD3 O95983 CEP76 Homo sapiens Q8TAP6
Y2H Prey Pooling
25416956
Intra MBD3 O95983 CEP76 Homo sapiens Q8TAP6
Validated Y2H
25416956
Intra MBD3 O95983 CEP76 Homo sapiens Q8TAP6
Y2H Array
25416956
Intra MBD3 O95983 RCN3 Homo sapiens Q96D15
Y2H Prey Pooling
25416956
Intra MBD3 O95983 RCN3 Homo sapiens Q96D15
Validated Y2H
25416956
Intra MBD3 O95983 RCN3 Homo sapiens Q96D15
Y2H Array
25416956
Intra MBD3 O95983 GATAD2B Homo sapiens Q8WXI9
Validated Y2H
25416956
Intra MBD3 O95983 GATAD2B Homo sapiens Q8WXI9
Pull Down
25123934
Intra MBD3 O95983 GATAD2B Homo sapiens Q8WXI9
Y2H Prey Pooling
25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Hutchinson-Gilford Progeria Syndrome

Progeria

HGPS

Hutchinson-Gilford Syndrome

Hutchinson-Gilford Progeria

Hutchinson Gilford Syndrome

Hutchinson Gilford Progeria Syndrome

Hutchinson-Gilford Disease

Progeria Of Childhood

Hutchinson-Gilford-Progeria Syndrome

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Bos taurus MBD3 VGNC VGNC:31274
Canis familiaris MBD3 VGNC VGNC:43050
Macaca mulatta MBD3 VGNC VGNC:81470
Rattus norvegicus MBD3 RGD RGD:1307389
Felis catus MBD3 VGNC VGNC:68199
Mus musculus MBD3 MGD MGI:1333812