1. Gene
  2. KDM2A - lysine demethylase 2A Gene

KDM2A - lysine demethylase 2A Gene

中文名称:赖氨酸脱甲基酶 2A

种属: Homo sapiens

同用名: FBL7; CXXC8; FBL11; FBXL11; JHDM1A; LILINA

基因 ID: 22992 | 基因类型: protein coding

关于 KDM2A

Cytogenetic location: 11q13.2 Genomic coordinates (GRCh38): 11:67,119,263-67,258,082 (from NCBI)

This gene has 15 transcripts (splice variants), 296 orthologues and 4 paralogues. Ubiquitous expression in testis (RPKM 25.2), bone marrow (RPKM 22.4) and 25 other tissues.

功能概要

该基因编码 F-box 蛋白家族的一个成员,其特征在于大约 40 个氨基酸基序,即 F-box。 F-box 蛋白构成称为 SCF (SKP1-cullin-F-box) 的泛素蛋白连接酶复合物的四个亚基之一,其在磷酸化依赖性泛素化中发挥作用。 F-box 蛋白分为 3 类:包含 WD-40 结构域的 Fbws、包含富含亮氨酸重复序列的 Fbls 和包含不同蛋白质-蛋白质相互作用模块或无可识别基序的 Fbxs。该基因编码的蛋白质属于 Fbls 类,除 F-box 外,还包含至少六个高度退化的富含亮氨酸的重复序列。该家族成员在表观遗传沉默中发挥作用。它在 CpG 岛成核并特异性去甲基化组蛋白 H3 的单甲基化和二甲基化赖氨酸 36。可变剪接导致多个转录本变体。[RefSeq 提供,2012 年 1 月]

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein Ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class and, in addition to an F-box, contains at least six highly degenerated leucine-rich repeats. This family member plays a role in epigenetic silencing. It nucleates at CpG islands and specifically demethylates both mono- and di-methylated lysine-36 of histone H3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2012]

KDM2A 基因产物(2)

mRNA Protein Name
NM_001256405.2 NP_001243334.1 lysine-specific demethylase 2A isoform b
NM_012308.3 NP_036440.1 lysine-specific demethylase 2A isoform a
基因本体论
  • 分子功能
  • 生物过程
分子功能 GO 注释 逻辑证据 参考文献 来源
enables histone H3K36 demethylase activity IMP
IMP: 通过突变表型推断
20417597 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
15070733 GOA
enables unmethylated CpG binding IDA
IDA: 通过直接分析推断
29276034 GOA
enables zinc ion binding IDA
IDA: 通过直接分析推断
29276034 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in circadian regulation of gene expression IMP
IMP: 通过突变表型推断
26037310 GOA
involved in double-strand break repair via nonhomologous end joining IMP
IMP: 通过突变表型推断
21187428 GOA
involved in negative regulation of transcription by competitive promoter binding IMP
IMP: 通过突变表型推断
26037310 GOA
involved in regulation of circadian rhythm IMP
IMP: 通过突变表型推断
26037310 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

KDM2A 蛋白结构

JmjC

JmjC: JmjC domain, hydroxylase (199 - 299)

zf-CXXC

zf-CXXC: CXXC zinc finger domain (565 - 609)

F-box

F-box: F-box domain (896 - 934)

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  • 1162 a.a.
蛋白主名 其他名称

lysine-specific demethylase 2A

CXXC-type zinc finger protein 8

KDM2A 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
KDM2A Q9Y2K7 SKP1 Homo sapiens P63208
TAP
24981860
种属间: 跨种属相互作用 种属内: 同种属相互作用

KDM2A 抗体

目录号 产品名 应用 反应物种
HY-P83067 KDM2A Antibody (YA2812) WB, IHC-F, IHC-P, ICC/IF, IP Human

关联疾病

疾病名称 别名
Duodenum Adenoma
Ossifying Fibromyxoid Tumor

Ossifying Fibromyxoid Tumour

Ossifying Fibromyxoma

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Mus musculus KDM2A MGD MGI:1354736
Bos taurus KDM2A VGNC VGNC:56269
Macaca mulatta KDM2A VGNC VGNC:73824
Rattus norvegicus KDM2A RGD RGD:1309419
Canis familiaris KDM2A VGNC VGNC:42320
Felis catus KDM2A VGNC VGNC:63069
Others KDM2A NCBI