1. Gene
  2. Scn5a - sodium voltage-gated channel alpha subunit 5 Gene

Scn5a - sodium voltage-gated channel alpha subunit 5 Gene

中文名称:钠电压门控通道 α 亚基 5

种属: Rattus norvegicus

同用名: SCAL; Nav1.5

基因 ID: 25665 | 基因类型: protein coding

关于 Scn5a

Primary_assembly 8: 119,220,905-119,318,769 reverse strand.mRatBN7.2:CM026981.1

This gene has 3 transcripts (splice variants), 94 orthologues, 26 paralogues and is associated with 58 phenotypes. Restricted expression toward (RPKM 231.9).

功能概要

该基因编码的蛋白可启动锚蛋白结合活性;成纤维细胞生长因子结合活性;电压门控钠通道活动参与心肌细胞动作电位。参与多个过程,包括动物器官发育;对参与肌肉适应调节的去神经支配的反应;和钠离子跨质膜输入。位于丁字管和闰盘内。脑缺血和充血性心力衰竭的生物标志物。该基因的人类直系同源物与心脏传导疾病有关(多个);内在性心肌病(多发性);和婴儿猝死综合症。与人类 SCN5A(钠电压门控通道 α 亚基 5)同源。 [由基因组资源联盟提供,2022 年 4 月]

Enables ankyrin binding activity; Fibroblast Growth Factor binding activity; and voltage-gated Sodium Channel activity involved in cardiac muscle cell action potential. Involved in several processes, including animal organ development; response to denervation involved in regulation of muscle adaptation; and sodium ion import across plasma membrane. Located in T-tubule and intercalated disc. Biomarker of brain ischemia and congestive heart failure. Human ortholog(s) of this gene implicated in heart conduction disease (multiple); intrinsic cardiomyopathy (multiple); and sudden infant death syndrome. Orthologous to human SCN5A (sodium voltage-gated channel alpha subunit 5). [provided by Alliance of Genome Resources, Apr 2022]

Scn5a 基因产物(2)

mRNA Protein Name
NM_001160162.2 NP_001153634.2 sodium channel protein type 5 subunit alpha isoform 2
NM_013125.3 NP_037257.2 sodium channel protein type 5 subunit alpha isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables ankyrin binding IDA
IDA: 通过直接分析推断
15579534 RGD
enables ankyrin binding IPI
IPI: 通过物理相互作用推断
15579534 RGD
enables fibroblast growth factor binding IPI
IPI: 通过物理相互作用推断
12401812 RGD
enables protein binding IPI
IPI: 通过物理相互作用推断
11238277 RGD
enables voltage-gated sodium channel activity involved in cardiac muscle cell action potential IMP
IMP: 通过突变表型推断
29457789 RGD
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in brainstem development IEP
IEP: 通过表达模式推断
22331407 RGD
involved in cerebellum development IEP
IEP: 通过表达模式推断
22331407 RGD
involved in membrane depolarization during cardiac muscle cell action potential IMP
IMP: 通过突变表型推断
29457789 RGD
involved in odontogenesis of dentin-containing tooth IEP
IEP: 通过表达模式推断
21640979 RGD
involved in positive regulation of action potential IMP
IMP: 通过突变表型推断
22336133 RGD
involved in positive regulation of epithelial cell proliferation IMP
IMP: 通过突变表型推断
16331678 RGD
involved in positive regulation of heart rate IMP
IMP: 通过突变表型推断
17259145 RGD
involved in response to denervation involved in regulation of muscle adaptation IMP
IMP: 通过突变表型推断
22336133 RGD
involved in sodium ion import across plasma membrane IMP
IMP: 通过突变表型推断
29457789 RGD
involved in sodium ion transmembrane transport IMP
IMP: 通过突变表型推断
12562928 RGD
involved in telencephalon development IEP
IEP: 通过表达模式推断
22331407 RGD
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in T-tubule IDA
IDA: 通过直接分析推断
15579534 RGD
located in intercalated disc IDA
IDA: 通过直接分析推断
15579534 RGD
located in plasma membrane IDA
IDA: 通过直接分析推断
21617128 RGD
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

Scn5a 蛋白结构

Ion_trans

Ion_trans: pfam00520 (130 - 423)

Na_trans_cytopl

Na_trans_cytopl: pfam11933 (509 - 667)

Ion_trans

Ion_trans: pfam00520 (716 - 929)

Na_trans_assoc

Na_trans_assoc: pfam06512 (955 - 1202)

Ion_trans

Ion_trans: pfam00520 (1206 - 1481)

Na_channel_gate

Na_channel_gate: cd13433 (1473 - 1525)

Ion_trans

Ion_trans: pfam00520 (1530 - 1784)

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  • 2020 a.a.
蛋白主名 其他名称

sodium channel protein type 5 subunit alpha

sodium channel protein cardiac muscle subunit alpha

sodium channel protein type V subunit alpha

sodium channel, voltage-gated, type 5, alpha subunit

sodium channel, voltage-gated, type V, alpha polypeptide

sodium channel, voltage-gated, type V, alpha subunit

voltage-gated sodium channel Nav1.5c

voltage-gated sodium channel subunit alpha Nav1.5

直系同源

种属 基因名 来源 基因 ID
Homo sapiens Scn5a NCBI NCBI:6331