1. Gene
  2. YTHDC2 - YTH domain containing 2 Gene

YTHDC2 - YTH domain containing 2 Gene

中文名称:含 YTH 域 2

种属: Homo sapiens

同用名: CAHL; hYTHDC2

基因 ID: 64848 | 基因类型: protein coding

关于 YTHDC2

Cytogenetic location: 5q22.2 Genomic coordinates (GRCh38): 5:113,513,694-113,595,284 (from NCBI)

This gene has 7 transcripts (splice variants), 209 orthologues and 18 paralogues. Ubiquitous expression in testis (RPKM 9.0), lymph node (RPKM 7.1) and 25 other tissues.

功能概要

该基因编码 DEAH (Asp-Glu-Ala-His) 蛋白质亚家族的成员,是 RNA 解旋酶 DEAD (Asp-Glu-Ala-Asp) 盒家族的一部分。编码的蛋白质与 N6-甲基腺苷结合,N6-甲基腺苷是一种常见的修饰 RNA 核苷酸,富含真核信使 RNA 的终止密码子和 3' UTR。蛋白质与这种修饰核苷酸的结合可以调节 mRNA 的翻译和稳定性。该基因可能与人类患者对胰腺癌的易感性有关,并且该基因的敲低导致人类肝癌细胞系的增殖减少。[RefSeq 提供,2016 年 9 月]

This gene encodes a member of the DEAH (Asp-Glu-Ala-His) subfamily of proteins, part of the DEAD (Asp-Glu-Ala-Asp) box family of RNA helicases. The encoded protein binds to N6-methyladenosine, a common modified RNA nucleotide that is enriched in the stop codons and 3' UTRs of eukaryotic messenger RNAs. Binding of proteins to this modified nucleotide may regulate mRNA translation and stability. This gene may be associated with susceptibility to pancreatic Cancer in human patients, and knockdown of this gene resulted in reduced proliferation in a human liver Cancer cell line. [provided by RefSeq, Sep 2016]

YTHDC2 基因产物(3)

mRNA Protein Name
NM_001345975.2 NP_001332904.1 3'-5' RNA helicase YTHDC2 isoform 2
NM_001345976.2 NP_001332905.1 3'-5' RNA helicase YTHDC2 isoform 3
NM_022828.5 NP_073739.3 3'-5' RNA helicase YTHDC2 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables 3'-5' RNA helicase activity IDA
IDA: 通过直接分析推断
29033321 GOA
enables ATP-dependent activity, acting on RNA IDA
IDA: 通过直接分析推断
21559518 GOA
enables N6-methyladenosine-containing RNA reader activity IDA
IDA: 通过直接分析推断
26318451 GOA
enables RNA polymerase binding IPI
IPI: 通过物理相互作用推断
21559518 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
21903422 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in positive regulation by host of viral genome replication IMP
IMP: 通过突变表型推断
21559518 GOA
involved in response to interleukin-1 IDA
IDA: 通过直接分析推断
21559518 GOA
involved in response to tumor necrosis factor IDA
IDA: 通过直接分析推断
21559518 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in endoplasmic reticulum IDA
IDA: 通过直接分析推断
21559518 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

YTHDC2 蛋白结构

R3H

R3H: R3H domain (42 - 105)

DEAD

DEAD: DEAD/DEAH box helicase (198 - 352)

Ank_2

Ank_2: Ankyrin repeats (3 copies) (487 - 565)

Helicase_C

Helicase_C: Helicase conserved C-terminal domain (655 - 743)

HA2

HA2: Helicase associated domain (HA2) (808 - 901)

OB_NTP_bind

OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold (939 - 1065)

YTH

YTH: YT521-B-like domain (1288 - 1420)

  • 0
  • 300
  • 600
  • 900
  • 1200
  • 1430 a.a.
蛋白主名 其他名称

3'-5' RNA helicase YTHDC2

CsA-associated helicase-like protein

YTHDC2 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属间
YTHDC2 Q9H6S0 Meioc Mus musculus A2AG06
Anti Tag CoIP
26742488
种属内
YTHDC2 Q9H6S0 IRF4 Homo sapiens Q15306
Anti Tag CoIP
21903422
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Wilms Tumor 1

Nephroblastoma

Wilms Tumor

WT1

Wilms' Tumor

Bilateral Wilms Tumor

Wilms Tumor, Type 1

Wilms Tumor, Somatic

Adult Nephroblastoma

Wt1 Disorder

Renal Embryonic Tumor

Adult Kidney Wilms Tumor

Childhood Kidney Wilms Tumor

Nonanaplastic Kidney Wilms Tumor

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Mus musculus YTHDC2 MGD MGI:2448561
Canis familiaris YTHDC2 VGNC VGNC:48504
Rattus norvegicus YTHDC2 RGD RGD:1563192
Bos taurus YTHDC2 VGNC VGNC:37040
Macaca mulatta YTHDC2 VGNC VGNC:79452