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  2. ATG4D - autophagy related 4D cysteine peptidase Gene

ATG4D - autophagy related 4D cysteine peptidase Gene

中文名称:自噬相关的 4D 半胱氨酸肽酶

种属: Homo sapiens

同用名: APG4D; AUTL4; APG4-D; HsAPG4D

基因 ID: 84971 | 基因类型: protein coding

关于 ATG4D

Cytogenetic location: 19p13.2 Genomic coordinates (GRCh38): 19:10,543,904-10,553,418 (from NCBI)

This gene has 12 transcripts (splice variants), 258 orthologues and 3 paralogues. Broad expression in testis (RPKM 21.1), duodenum (RPKM 13.4) and 25 other tissues.

功能概要

自噬是内源性蛋白质和受损细胞器在细胞内被破坏的过程。据推测,自噬对于分化、变态、非凋亡性细胞死亡和衰老过程中的细胞稳态和细胞重塑至关重要。在一些恶性肿瘤中已经描述了自噬水平降低,并且已经提出自噬在控制与癌症相关的不受调节的细胞生长中的作用。该基因属于 C54 内肽酶的自噬相关蛋白 4 (Atg4) 家族。该家族的成员编码的蛋白质在自噬体的生物发生中发挥作用,自噬体隔离细胞质和细胞器以被溶酶体降解。可变剪接导致多个转录本变体。[RefSeq 提供,2013 年 7 月]

Autophagy is the process by which endogenous proteins and damaged organelles are destroyed intracellularly. Autophagy is postulated to be essential for cell homeostasis and cell remodeling during differentiation, metamorphosis, non-apoptotic cell death, and aging. Reduced levels of Autophagy have been described in some malignant tumors, and a role for Autophagy in controlling the unregulated cell growth linked to Cancer has been proposed. This gene belongs to the autophagy-related protein 4 (Atg4) family of C54 endopeptidases. Members of this family encode proteins that play a role in the biogenesis of autophagosomes, which sequester the cytosol and organelles for degradation by lysosomes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

ATG4D 基因产物(2)

mRNA Protein Name
NM_001281504.2 NP_001268433.1 cysteine protease ATG4D isoform 2
NM_032885.6 NP_116274.3 cysteine protease ATG4D isoform 1 precursor
基因本体论
  • 分子功能
  • 生物过程
分子功能 GO 注释 逻辑证据 参考文献 来源
enables cysteine-type exopeptidase activity IDA
IDA: 通过直接分析推断
21177865 GOA
enables cysteine-type peptidase activity IDA
IDA: 通过直接分析推断
21177865 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in autophagosome assembly IDA
IDA: 通过直接分析推断
21177865 GOA
involved in autophagy IDA
IDA: 通过直接分析推断
30661429 GOA
involved in mitophagy IMP
IMP: 通过突变表型推断
33773106 GOA
involved in protein delipidation IDA
IDA: 通过直接分析推断
29458288 GOA
involved in protein localization to phagophore assembly site IMP
IMP: 通过突变表型推断
33773106 GOA
involved in proteolysis IDA
IDA: 通过直接分析推断
21177865 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

ATG4D 蛋白结构

Peptidase_C54

Peptidase_C54: Peptidase family C54 (109 - 412)

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  • 474 a.a.
蛋白主名 其他名称

cysteine protease ATG4D

APG4 autophagy 4 homolog D

直系同源

种属 基因名 来源 基因 ID
Bos taurus ATG4D VGNC VGNC:26260
Canis familiaris ATG4D VGNC VGNC:38225
Felis catus ATG4D VGNC VGNC:60005
Macaca mulatta ATG4D VGNC VGNC:108473
Mus musculus ATG4D MGD MGI:2444308
Rattus norvegicus ATG4D RGD RGD:1596392