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  2. Scn5a - sodium channel, voltage-gated, type V, alpha Gene

Scn5a - sodium channel, voltage-gated, type V, alpha Gene

中文名称:钠通道,电压门控,V 型,alpha

种属: Mus musculus

同用名: mH1; SkM1; SkM2; Nav1.5; Nav1.5c

基因 ID: 20271 | 基因类型: protein coding

关于 Scn5a

Chromosome 9: 119,312,474-119,408,082 reverse strand.GRCm39:CM001002.3

This gene has 4 transcripts (splice variants), 94 orthologues, 26 paralogues and is associated with 56 phenotypes. Biased expression in heart adult (RPKM 37.1) and lung adult (RPKM 3.7).

功能概要

该基因编码的蛋白可启动参与 SA 结细胞动作电位的支架蛋白结合活性和电压门控钠通道活性。作用于多个过程的上游或内部,包括参与收缩的心肌细胞动作电位;调节心脏收缩;和钠离子跨质膜输入。位于多个细胞成分中,包括 T 管;闰盘;和侧质膜。钠通道复合体的一部分。以多种结构表达,包括颅神经节;表皮;心;感觉器官;和骨架。用于研究Brugada综合征1;扩张型心肌病 1E;长 QT 综合征 3;进行性家族性心脏传导阻滞 IA 型;和病窦综合征。该基因的人类直系同源物与心脏传导疾病有关(多个);内在性心肌病(多发性);和婴儿猝死综合症。与人类 SCN5A(钠电压门控通道 α 亚基 5)同源。 [由基因组资源联盟提供,2022 年 4 月]

Enables scaffold protein binding activity and voltage-gated Sodium Channel activity involved in SA node cell action potential. Acts upstream of or within several processes, including cardiac muscle cell action potential involved in contraction; regulation of heart contraction; and sodium ion import across plasma membrane. Located in several cellular components, including T-tubule; intercalated disc; and lateral plasma membrane. Part of Sodium Channel complex. Is expressed in several structures, including cranial ganglion; epidermis; heart; sensory organ; and skeleton. Used to study Brugada syndrome 1; dilated cardiomyopathy 1E; long QT syndrome 3; progressive familial heart block type IA; and sick sinus syndrome. Human ortholog(s) of this gene implicated in heart conduction disease (multiple); intrinsic cardiomyopathy (multiple); and sudden infant death syndrome. Orthologous to human SCN5A (sodium voltage-gated channel alpha subunit 5). [provided by Alliance of Genome Resources, Apr 2022]

Scn5a 基因产物(2)

mRNA Protein Name
NM_001253860.1 NP_001240789.1 sodium channel protein type 5 subunit alpha isoform 2
NM_021544.4 NP_067519.2 sodium channel protein type 5 subunit alpha isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
15272007 MGI
enables scaffold protein binding IPI
IPI: 通过物理相互作用推断
18591664 MGI
enables ubiquitin protein ligase binding IPI
IPI: 通过物理相互作用推断
32175648 MGI
enables voltage-gated sodium channel activity IDA
IDA: 通过直接分析推断
32175648 MGI
enables voltage-gated sodium channel activity involved in SA node cell action potential IMP
IMP: 通过突变表型推断
15932895 MGI
enables voltage-gated sodium channel activity involved in cardiac muscle cell action potential IMP
IMP: 通过突变表型推断
11972032 MGI
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in T-tubule IDA
IDA: 通过直接分析推断
15746173 MGI
located in cell surface IDA
IDA: 通过直接分析推断
17884088 MGI
located in intercalated disc IDA
IDA: 通过直接分析推断
15272007 MGI
located in lateral plasma membrane IDA
IDA: 通过直接分析推断
21817159 MGI
is active in plasma membrane IDA
IDA: 通过直接分析推断
32175648 MGI
located in plasma membrane IDA
IDA: 通过直接分析推断
15746173 MGI
part of sodium channel complex IPI
IPI: 通过物理相互作用推断
15272007 MGI
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

Scn5a 蛋白结构

Ion_trans

Ion_trans: pfam00520 (129 - 422)

Na_trans_cytopl

Na_trans_cytopl: pfam11933 (508 - 666)

Ion_trans

Ion_trans: pfam00520 (715 - 928)

Na_trans_assoc

Na_trans_assoc: pfam06512 (954 - 1202)

Ion_trans

Ion_trans: pfam00520 (1206 - 1481)

Na_channel_gate

Na_channel_gate: cd13433 (1473 - 1525)

Ion_trans

Ion_trans: pfam00520 (1530 - 1784)

  • 0
  • 400
  • 800
  • 1200
  • 1600
  • 2020 a.a.
蛋白主名 其他名称

sodium channel protein type 5 subunit alpha

sodium channel protein cardiac muscle subunit alpha

sodium channel protein type V subunit alpha

sodium channel, voltage-gated, type V, alpha polypeptide

voltage-gated sodium channel subunit alpha Nav1.5

Scn5a 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra Scn5a Q9JJV9 Xirp2 Mus musculus Q4U4S6
Anti Bait CoIP
29306897
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Homo sapiens Scn5a NCBI NCBI:6331