1. Gene
  2. SMARCA1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 Gene

SMARCA1 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 Gene

中文名称:SWI/SNF 相关、基质相关、肌动蛋白依赖性染色质调节因子,a 亚科,成员 1

种属: Homo sapiens

同用名: SWI; ISWI; SWI2; SNF2L; SNF2L1; SNF2LB; SNF2LT; hSNF2L; NURF140

基因 ID: 6594 | 基因类型: protein coding

关于 SMARCA1

Cytogenetic location: Xq25-q26.1 Genomic coordinates (GRCh38): X:129,446,506-129,523,490 (from NCBI)

This gene has 5 transcripts (splice variants), 210 orthologues and 30 paralogues. Broad expression in adrenal (RPKM 46.7), testis (RPKM 43.0) and 22 other tissues.

功能概要

该基因编码 SWI/SNF 蛋白质家族的成员。编码的蛋白质是一种 ATP 酶,它在不同的组织中表达,并有助于参与转录的染色质重塑复合物。该蛋白还可能在 DNA 损伤、生长抑制和癌细胞凋亡中发挥作用。可变剪接导致多个转录本变体。[RefSeq 提供,2013 年 9 月]

This gene encodes a member of the SWI/SNF family of proteins. The encoded protein is an ATPase which is expressed in diverse tissues and contributes to the chromatin remodeling complex that is involved in transcription. The protein may also play a role in DNA damage, growth inhibition and Apoptosis of Cancer cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

SMARCA1 基因产物(7)

mRNA Protein Name
NM_001282874.2 NP_001269803.1 probable global transcription activator SNF2L1 isoform d
NM_001282875.2 NP_001269804.1 probable global transcription activator SNF2L1 isoform c
NM_001378261.1 NP_001365190.1 probable global transcription activator SNF2L1 isoform e
NM_001378262.1 NP_001365191.1 probable global transcription activator SNF2L1 isoform f
NM_001378263.1 NP_001365192.1 probable global transcription activator SNF2L1 isoform f
NM_001378264.1 NP_001365193.1 probable global transcription activator SNF2L1 isoform g
NM_003069.5 NP_003060.2 probable global transcription activator SNF2L1 isoform a
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables ATP-dependent DNA/DNA annealing activity IDA
IDA: 通过直接分析推断
22705370 GOA
contributes to ATP-dependent activity, acting on DNA IDA
IDA: 通过直接分析推断
14609955 GOA
contributes to ATP-dependent chromatin remodeler activity IDA
IDA: 通过直接分析推断
15640247 GOA
enables ATP-dependent chromatin remodeler activity IDA
IDA: 通过直接分析推断
15640247 GOA
enables RNA polymerase II-specific DNA-binding transcription factor binding IPI
IPI: 通过物理相互作用推断
27141965 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
14609955 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in brain development IMP
IMP: 通过突变表型推断
14609955 GOA
involved in chromatin remodeling IDA
IDA: 通过直接分析推断
14609955 GOA
involved in positive regulation of DNA-templated transcription IMP
IMP: 通过突变表型推断
14609955 GOA
involved in positive regulation of transcription by RNA polymerase II IMP
IMP: 通过突变表型推断
14609955 GOA
involved in regulation of DNA-templated transcription IDA
IDA: 通过直接分析推断
14609955 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of ATPase complex IDA
IDA: 通过直接分析推断
14609955 GOA
part of CERF complex IDA
IDA: 通过直接分析推断
15640247 GOA
part of CERF complex IPI
IPI: 通过物理相互作用推断
15640247 GOA
part of NURF complex IDA
IDA: 通过直接分析推断
20850016 GOA
part of NURF complex IPI
IPI: 通过物理相互作用推断
14609955 GOA
located in nucleus IDA
IDA: 通过直接分析推断
14609955 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

SMARCA1 蛋白结构

DBINO

DBINO: DNA-binding domain (55 - 113)

SNF2_N

SNF2_N: SNF2 family N-terminal domain (186 - 466)

Helicase_C

Helicase_C: Helicase conserved C-terminal domain (523 - 612)

HAND

HAND: HAND (758 - 856)

SLIDE

SLIDE: SLIDE (913 - 1027)

  • 0
  • 200
  • 400
  • 600
  • 800
  • 1000
  • 1054 a.a.
蛋白主名 其他名称

probable global transcription activator SNF2L1

ATP-dependent helicase SMARCA1

SMARCA1 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
SMARCA1 P28370 BPTF Homo sapiens Q12830
Anti Tag CoIP
14609955
种属内
SMARCA1 P28370 BPTF Homo sapiens Q12830
Anti Tag CoIP
15640247
种属内
SMARCA1 P28370 BPTF Homo sapiens Q12830
Anti Tag CoIP
35271311
种属内
SMARCA1 P28370 BPTF Homo sapiens Q12830
Anti Bait CoIP
14609955
种属内
SMARCA1 P28370 BPTF Homo sapiens Q12830
GMS
14609955
种属内
SMARCA1 P28370 BAZ1B Homo sapiens Q9UIG0
Anti Tag CoIP
35271311
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Rett Syndrome

Atypical Rett Syndrome

RTT

Rett Disorder

Rts

Autism, Dementia, Ataxia, And Loss Of Purposeful Hand Use

Rett Syndrome, Preserved Speech Variant

Rett Syndrome, Atypical

Rett'S Disorder

Rett Syndrome Variant

Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use Syndrome

Cerebroatrophic Hyperammonemia

Rett Like Syndrome

Rett'S Syndrome

Atypical Rtt

Autism-Dementia-Ataxia-Loss Of Purposeful Hand Use

Rett Syndrome Preserved Speech Variant

Rett Syndrome Zappella Variant

Rett Syndrome, Zappella Variant

Cockayne Syndrome

Cockayne'S Syndrome

Dwarfism-Retinal Atrophy-Deafness Syndrome

Neill-Dingwall Syndrome

Progeria-Like Syndrome

Progeroid Nanism

Cs

Alpha Thalassemia-X-Linked Intellectual Disability Syndrome

Atr-X Syndrome

Atr, Nondeletion Type

Alpha-Thalassemia X-Linked Intellectual Disability Syndrome

Atrx Syndrome

Alpha-Thalassemia/Mental Retardation Syndrome Nondeletion Type

Alpha Thalassemia Intellectual Disability Syndrome, Nondeletion Type, X-Linked

X-Linked Alpha-Thalassemia/Intellectual Disability Syndrome

Xlmr Hypotonic Face Syndrome

Alpha Thalassemia X-Linked Intellectual Disability Syndrome

Alpha Thalassemia X-Linked Mental Retardation Syndrome

Alpha Thalassemia/Mental Retardation, X-Linked

Alpha-Thalassemia X-Linked Mental Retardation Syndrome

Alpha-Thalassemia/Mental Retardation Syndrome, Nondeletion Type

X-Linked Alpha-Thalassemia/Mental Retardation Syndrome

Xlmr-Hypotonic Face Syndrome

Alpha-Thalassemia-X-Linked Intellectual Disability Syndrome

Alpha-Thalassemia/Mental Retardation Syndrome, Nondeletion Type, X-Linked

Schimke Immunoosseous Dysplasia

Schimke Immuno-Osseous Dysplasia

SIOD

Immunoosseous Dysplasia, Schimke Type

Schimke Syndrome

Immunoosseous Dysplasia Schimke Type

Spondyloepiphyseal Dysplasia - Nephrotic Syndrome

Spondyloepiphyseal Dysplasia Nephrotic Syndrome

Spondyloepiphyseal Dysplasia-Nephrotic Syndrome

Cockayne Syndrome B

Cockayne Syndrome Type 2

Cockayne Syndrome, Type B

Cockayne Syndrome Type Ii

CSB

Cockayne Syndrome 2

Cockayne Syndrome Type B

Ckn2

Cockayne Syndrome, Type Ii

Autosomal Dominant Intellectual Developmental Disorder

Autosomal Dominant Mental Retardation

Autosomal Dominant Non-Syndromic Mental Retardation

Autosomal Dominant Non-Syndromic Intellectual Disability

Mental Retardation, Autosomal Dominant

Cartilage-Hair Hypoplasia

Metaphyseal Chondrodysplasia, Mckusick Type

CHH

Mckusick Type Metaphyseal Chondrodysplasia

Metaphyseal Dysplasia Without Hypotrichosis

Cartilage Hair Hypoplasia Like Syndrome

Metaphyseal Chondrodysplasia Mckusick Type

Chhv

Cartilage-Hair Hypoplasia Variant, Skeletal Manifestations Only

Cartilage-Hair Hypoplasia-Like Skeletal Dysplasia Without Hypotrichosis Or Immunodeficiency

Cartilage-Hair Syndrome

Mckusick'S Metaphyseal Chondrodysplasia Syndrome

Metaphyseal Chondrodysplasia, Recessive Type

Autosomal Recessive Metaphyseal Chondrodysplasia

Uv-Sensitive Syndrome

Uvss

Uv Sensitive Syndrome

Ultraviolet Sensitive Syndrome

Charge Syndrome

Charge Association

Hall-Hittner Syndrome

Charge Association--Coloboma, Heart Anomaly, Choanal Atresia, Retardation, Genital And Ear Anomalies

Hhs

Coloboma, Heart Anomaly, Choanal Atresia, Restriction Of Growth And Development, Genital And Ear Anomalies

Coloboma-Heart Defects-Atresia Choanae-Retardation Of Growth And Development-Genitourinary Problems-Ear Abnormalities Syndrome

CHARGES

Primary Hyperoxaluria

Hyperoxaluria

Hyperoxaluria, Primary

Oxalosis

Primary Oxalosis

Congenital Oxaluria

D-Glycerate Dehydrogenase Deficiency

Glyceric Aciduria

Glycolic Aciduria

Hepatic Agt Deficiency

Oxaluria, Primary

Peroxisomal Alanine:Glyoxylate Aminotransferase Deficiency

Primary Oxaluria

Hyperoxaluria Primary

Primary Hyperoxaluria Type 2

Primary Hyperoxaluria, Type I

Alpha-Thalassemia

Alpha Thalassemia

Alpha Thalassaemia

Alpha Plus Thalassemia

Thalassemia, Alpha-

Thalassemias, Alpha-

A-Thalassemia

Α-Thalassemia

A-THAL

Thalassemia

Alpha Thalassaemia Syndrome

Williams-Beuren Syndrome

Williams Syndrome

WBS

Wms

Deletion 7q11.23

Monosomy 7q11.23

Chromosome 7q11.23 Deletion Syndrome, 1.5- To 1.8-Mb

Fanconi Schlesinger Syndrome

Beuren Syndrome

Elfin Facies Syndrome

Elfin Facies With Hypercalcemia

Hypercalcemia-Supravalvar Aortic Stenosis

Ws

Coffin-Siris Syndrome 1

Coffin-Siris Syndrome

Fifth Digit Syndrome

Css

CSS1

Mrd12

Mental Retardation, Autosomal Dominant 12

Hhid

Dwarfism-Onychodysplasia

Hypertrichosis, Hyperkeratosis, Mental Retardation, And Distinctive Facial Features

Autosomal Dominant Mental Retardation 12

Short Stature-Onychodysplasia.

Intellectual Disability With Absent Fifth Fingernail And Terminal Phalanx

Mental Retardation With Hypoplastic Fifth Fingernails And Toenails

Short Stature-Onychodysplasia

Coffin-Siris Syndrome, Type 1

Mental Retardation, Autosomal Dominant, Type 12

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus SMARCA1 RGD RGD:1561046
Felis catus SMARCA1 VGNC VGNC:65462
Canis familiaris SMARCA1 VGNC VGNC:46528
Mus musculus SMARCA1 MGD MGI:1935127
Bos taurus SMARCA1 VGNC VGNC:34985
Macaca mulatta SMARCA1 VGNC VGNC:77646