1. Gene
  2. TAF13 - TATA-box binding protein associated factor 13 Gene

TAF13 - TATA-box binding protein associated factor 13 Gene

中文名称:TATA-box 结合蛋白相关因子 13

种属: Homo sapiens

同用名: MRT60; TAF2K; TAFII18; TAFII-18; TAF(II)18

基因 ID: 6884 | 基因类型: protein coding

关于 TAF13

Cytogenetic location: 1p13.3 Genomic coordinates (GRCh38): 1:109,064,140-109,076,003 (from NCBI)

This gene has 3 transcripts (splice variants), 230 orthologues, 1 paralogue and is associated with 3 phenotypes. Ubiquitous expression in brain (RPKM 23.1), kidney (RPKM 21.3) and 25 other tissues.

功能概要

RNA 聚合酶 II 启动转录需要 70 多种多肽的活性。协调这些活动的蛋白质是转录因子 IID (TFIID) ,它与核心启动子结合以正确定位聚合酶,充当组装转录复合物其余部分的支架,并充当调节信号的通道。 TFIID 由 TATA 结合蛋白 (TBP) 和一组称为 TBP 相关因子或 TAF 的进化保守蛋白组成。 TAF 可能参与基础转录,充当共激活因子,在启动子识别中发挥作用或修饰一般转录因子 (GTF) 以促进复杂的组装和转录起始。该基因编码与 TFIID 复合物子集相关的小亚基。该亚基与 TBP 以及 TFIID 的其他两个小亚基 TAF10 和 TAF11 相互作用。 6 号染色体上有一个假基因。[RefSeq 提供,2008 年 7 月]

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes a small subunit associated with a subset of TFIID complexes. This subunit interacts with TBP and with two other small subunits of TFIID, TAF10 and TAF11. There is a pseudogene located on chromosome 6. [provided by RefSeq, Jul 2008]

TAF13 基因产物(1)

mRNA Protein Name
NM_005645.4 NP_005636.1 transcription initiation factor TFIID subunit 13
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables TBP-class protein binding IPI
IPI: 通过物理相互作用推断
29111974 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
7729427 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in RNA polymerase II preinitiation complex assembly IPI
IPI: 通过物理相互作用推断
27007846 GOA
involved in mRNA transcription by RNA polymerase II IDA
IDA: 通过直接分析推断
17884155 GOA
involved in positive regulation of transcription initiation by RNA polymerase II IDA
IDA: 通过直接分析推断
17884155 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in nucleus EXP
EXP: 通过实验结果推断
23332750 GOA
part of transcription factor TFIID complex IDA
IDA: 通过直接分析推断
7729427 GOA
part of transcription factor TFIID complex IPI
IPI: 通过物理相互作用推断
23332750 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

TAF13 蛋白结构

TFIID-18kDa

TFIID-18kDa: Transcription initiation factor IID, 18kD subunit (31 - 119)

  • 0
  • 100
  • 124 a.a.
蛋白主名 其他名称

transcription initiation factor TFIID subunit 13

TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa

TAF13 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra TAF13 Q15543 TAF11 Homo sapiens Q15544
X-Ray Diffraction
9695952
Intra TAF13 Q15543 MTUS2 Homo sapiens Q5JR59-3
Y2H Prey Pooling
32296183
Intra TAF13 Q15543 MTUS2 Homo sapiens Q5JR59-3
Validated Y2H
32296183
Intra TAF13 Q15543 MTUS2 Homo sapiens Q5JR59-3
Y2H Array
32296183
Intra TAF13 Q15543 MTUS2 Homo sapiens Q5JR59-3
Y2H Array
31515488
Intra TAF13 Q15543 MTUS2 Homo sapiens Q5JR59
Validated Y2H
25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Intellectual Developmental Disorder, Autosomal Recessive 60

Mental Retardation, Autosomal Recessive 60

MRT60

Autosomal Recessive Intellectual Developmental Disorder 60

Primary Autosomal Recessive Microcephaly

Autosomal Recessive Primary Microcephaly

Mcph

True Microcephaly

Microcephalia Vera

Microcephaly Vera

Microcephaly Primary Hereditary

Microcephaly, Primary, Autosomal Recessive

Primary Microcephaly

Schizophrenia

SCZD

Schizophrenia With Or Without An Affective Disorder

Schizophrenia 12

Schizophrenia, Susceptibility To

Schizophrenia-1

Dementia Praecox

Schizophrenia 1

Dystonia 3, Torsion, X-Linked

X-Linked Dystonia-Parkinsonism

DYT3

Xdp

Lubag

Dystonia-Parkinsonism, X-Linked

Torsion Dystonia-Parkinsonism, Filipino Type

Dyt-Taf1

X-Linked Dystonia-Parkinsonism Syndrome

X-Linked Torsion Dystonia-Parkinsonism Syndrome

Dystonia Musculorum Deformans

X-Linked Dystonia-Parkinsonism/Lubag

Lubag Syndrome

Dystonia-3

Torsion Dystonia-Parkinsonism Filipino Type

X-Linked Torsion Dystonia 3

Dystonia, Torsion, X-Linked, Type 3

Microcephaly

Microencephaly

Microcephalus

Microcephalic

Nanocephaly

Congenital Microcephaly

Brain Hypoplasia

Brain Nondevelopment

Cephalic Hypoplasia

Undeveloped Cerebrum

Undeveloped Brain

Micrencephalon

Micrencephaly

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus TAF13 RGD RGD:1305398
Felis catus TAF13 VGNC VGNC:80373
Bos taurus TAF13 VGNC VGNC:35568
Mus musculus TAF13 MGD MGI:1913500
Canis familiaris TAF13 VGNC VGNC:47075
Others TAF13 NCBI