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  2. PABPC4 - poly(A) binding protein cytoplasmic 4 Gene

PABPC4 - poly(A) binding protein cytoplasmic 4 Gene

中文名称:poly (A) 结合蛋白细胞质 4

种属: Homo sapiens

同用名: APP1; APP-1; PABP4; iPABP

基因 ID: 8761 | 基因类型: protein coding

关于 PABPC4

Cytogenetic location: 1p34.3 Genomic coordinates (GRCh38): 1:39,560,816-39,576,790 (from NCBI)

This gene has 42 transcripts (splice variants), 219 orthologues and 24 paralogues. Ubiquitous expression in testis (RPKM 55.5), ovary (RPKM 46.1) and 25 other tissues.

功能概要

Poly (A) 结合蛋白 (PABP) 与大多数真核 mRNA 的 3-prime 末端存在的 poly (A) 尾部结合。 PABPC4 或 IPABP (诱导型 PABP) 被分离为编码蛋白质的激活诱导的 T 细胞 mRNA。 T 细胞的激活使 T 细胞中的 PABPC4 mRNA 水平增加了大约 5 倍。 PABPC4 包含 4 个 RNA 结合域和富含脯氨酸的 C 末端。 PABPC4 主要定位于细胞质。这表明 PABPC4 可能是调节活化 T 细胞中不稳定 mRNA 种类的稳定性所必需的。 PABPC4 也被鉴定为一种抗原,APP1 (活化血小板蛋白-1) ,在凝血酶活化的兔血小板上表达。 PABPC4 还可能参与血小板和巨核细胞中蛋白质翻译的调节,或者可能参与血小板致密颗粒中聚腺苷酸的结合或稳定。已发现该基因编码不同亚型的可变剪接转录物变体。还发现这种蛋白质与冠状病毒核衣壳蛋白相互作用,并被认为可以抑制冠状病毒复制。[RefSeq 提供,2021 年 11 月]

Poly(A)-binding proteins (PABPs) bind to the poly(A) tail present at the 3-prime ends of most eukaryotic mRNAs. PABPC4 or IPABP (inducible PABP) was isolated as an activation-induced T-cell mRNA encoding a protein. Activation of T cells increased PABPC4 mRNA levels in T cells approximately 5-fold. PABPC4 contains 4 RNA-binding domains and proline-rich C terminus. PABPC4 is localized primarily to the cytoplasm. It is suggested that PABPC4 might be necessary for regulation of stability of labile mRNA species in activated T cells. PABPC4 was also identified as an antigen, APP1 (activated-platelet protein-1), expressed on thrombin-activated rabbit platelets. PABPC4 may also be involved in the regulation of protein translation in platelets and megakaryocytes or may participate in the binding or stabilization of polyadenylates in platelet dense granules. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. This protein has also been found to interact with coronavirus nucleocapsid proteins and is thought to inhibit coronavirus replication. [provided by RefSeq, Nov 2021]

PABPC4 基因产物(3)

mRNA Protein Name
NM_001135653.2 NP_001129125.1 polyadenylate-binding protein 4 isoform 1
NM_001135654.2 NP_001129126.1 polyadenylate-binding protein 4 isoform 3
NM_003819.4 NP_003810.1 polyadenylate-binding protein 4 isoform 2
基因本体论
  • 分子功能
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables poly(A) binding IDA
IDA: 通过直接分析推断
8524242 GOA
NOT enables poly(C) RNA binding IDA
IDA: 通过直接分析推断
8524242 GOA
enables poly(U) RNA binding IDA
IDA: 通过直接分析推断
8524242 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
11369516 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in cytoplasm IDA
IDA: 通过直接分析推断
8524242 GOA
located in cytoplasmic stress granule IDA
IDA: 通过直接分析推断
21940797 GOA
located in nucleus IDA
IDA: 通过直接分析推断
21940797 GOA
part of ribonucleoprotein complex IDA
IDA: 通过直接分析推断
17289661 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PABPC4 蛋白结构

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (13 - 83)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (101 - 168)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (193 - 261)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (296 - 363)

PABP

PABP: Poly-adenylate binding protein, unique domain (552 - 623)

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  • 644 a.a.
蛋白主名 其他名称

polyadenylate-binding protein 4

PABP-4

PABPC4 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PABPC4 Q13310 PHLDA1 Homo sapiens Q8WV24
Y2H
11369516
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Deafness, Autosomal Dominant 5

DFNA5

Autosomal Dominant Nonsyndromic Deafness 5

Autosomal Dominant Deafness 5

Deafness, Autosomal Dominant, 5

Non-Syndromic Neurosensory Deafness Autosomal Dominant Type 5

Non-Syndromic Sensorineural Deafness Autosomal Dominant Type 5

Deafness, Autosomal Dominant, Type 5

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Bos taurus PABPC4 VGNC VGNC:55644
Macaca mulatta PABPC4 VGNC VGNC:100023
Rattus norvegicus PABPC4 RGD RGD:1305015
Mus musculus PABPC4 MGD MGI:2385206