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  2. DDX39A - DExD-box helicase 39A Gene

DDX39A - DExD-box helicase 39A Gene

中文名称:DExD-box 解旋酶 39A

种属: Homo sapiens

同用名: BAT1; DDXL; BAT1L; DDX39; URH49

基因 ID: 10212 | 基因类型: protein coding

关于 DDX39A

Cytogenetic location: 19p13.12 Genomic coordinates (GRCh38): 19:14,408,798-14,419,383 (from NCBI)

This gene has 21 transcripts (splice variants), 283 orthologues and 38 paralogues. Broad expression in testis (RPKM 59.3), bone marrow (RPKM 58.2) and 24 other tissues.

功能概要

该基因编码 DEAD box 蛋白家族的一个成员。这些蛋白质的特征在于保守基序 Asp-Glu-Ala-Asp (DEAD) ,并且是推定的 RNA 解旋酶。它们涉及许多涉及 RNA 二级结构改变的细胞过程,例如翻译起始、核和线粒体剪接以及核糖体和剪接体组装。根据它们的分布模式,DEAD box 蛋白家族的一些成员被认为参与胚胎发生、精子发生以及细胞生长和分裂。该基因被认为在胃肠道间质瘤患者的预后中发挥作用。该基因的假基因存在于 13 号染色体上。交替剪接导致多个转录变体。已经描述了该基因的其他可变剪接转录变体,但它们的全长性质尚不清楚。[RefSeq 提供,2013 年 9 月]

This gene encodes a member of the DEAD box protein family. These proteins are characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD) and are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of the DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene is thought to play a role in the prognosis of patients with gastrointestinal stromal tumors. A pseudogene of this gene is present on chromosome 13. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013]

DDX39A 基因产物(1)

mRNA Protein Name
NM_005804.4 NP_005795.2 ATP-dependent RNA helicase DDX39A
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables ATP hydrolysis activity EXP
EXP: 通过实验结果推断
20844015 GOA
enables identical protein binding IPI
IPI: 通过物理相互作用推断
25416956 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
14667819 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in mRNA export from nucleus IGI
IGI: 通过遗传相互作用推断
15047853 GOA
involved in mRNA splicing, via spliceosome IGI
IGI: 通过遗传相互作用推断
15047853 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
colocalizes with cytoplasm IDA
IDA: 通过直接分析推断
21859714 GOA
located in nucleus IDA
IDA: 通过直接分析推断
21859714 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

DDX39A 蛋白结构

DEAD

DEAD: DEAD/DEAH box helicase (69 - 234)

Helicase_C

Helicase_C: Helicase conserved C-terminal domain (305 - 381)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 427 a.a.
蛋白主名 其他名称

ATP-dependent RNA helicase DDX39A

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A

DDX39A 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra DDX39A O00148 UBE2I Homo sapiens Q7KZS0
Y2H Prey Pooling
32296183
Intra DDX39A O00148 UBE2I Homo sapiens Q7KZS0
Validated Y2H
32296183
Intra DDX39A O00148 UBE2I Homo sapiens Q7KZS0
Y2H Array
32296183
Intra DDX39A O00148 CHTOP Homo sapiens Q9Y3Y2-3
Y2H Prey Pooling
32296183
Intra DDX39A O00148 CHTOP Homo sapiens Q9Y3Y2-3
Validated Y2H
32296183
Intra DDX39A O00148 CHTOP Homo sapiens Q9Y3Y2-3
Y2H Array
32296183
Intra DDX39A O00148 RNF4 Homo sapiens P78317
Validated Y2H
32296183
Intra DDX39A O00148 RNF4 Homo sapiens P78317
Y2H Prey Pooling
32296183
Intra DDX39A O00148 RNF4 Homo sapiens P78317
Y2H Array
32296183
Intra DDX39A O00148 SARNP Homo sapiens P82979
Validated Y2H
25416956
Intra DDX39A O00148 SARNP Homo sapiens P82979
Y2H Pooling
16189514
Intra DDX39A O00148 ccsb_9919 Homo sapiens EBI-25847655
Y2H Array
32814053
Intra DDX39A O00148 DDX39B Homo sapiens Q13838
Validated Y2H
32296183
Intra DDX39A O00148 DDX39B Homo sapiens Q13838
Anti Tag CoIP
33961781
Intra DDX39A O00148 DDX39B Homo sapiens Q13838
Y2H Prey Pooling
32296183
Intra DDX39A O00148 DDX39A Homo sapiens O00148
Y2H Prey Pooling
32296183
Intra DDX39A O00148 DDX39B Homo sapiens Q13838
Y2H Array
32296183
Intra DDX39A O00148 DDX39A Homo sapiens O00148
Y2H Array
25416956
Intra DDX39A O00148 ccsb_9919 Homo sapiens EBI-25847655
Y2H Pooling
32814053
Intra DDX39A O00148 DDX39A Homo sapiens O00148
Y2H Array
32296183
Intra DDX39A O00148 ccsb_9919 Homo sapiens EBI-25847655
Validated Y2H
32814053
Intra DDX39A O00148 DDX39A Homo sapiens O00148
Validated Y2H
32296183
Intra DDX39A O00148 HSPB1 Homo sapiens P04792
Validated Y2H
32814053
Intra DDX39A O00148 HSPB1 Homo sapiens P04792
Y2H Pooling
32814053
Intra DDX39A O00148 HSPB1 Homo sapiens P04792
Y2H Array
32814053
Intra DDX39A O00148 HTT Homo sapiens P42858
Validated Y2H
32814053
Intra DDX39A O00148 HTT Homo sapiens P42858
Y2H Pooling
32814053
Intra DDX39A O00148 HTT Homo sapiens P42858
Y2H Array
32814053
Intra DDX39A O00148 h0yhg0_human Homo sapiens H0YHG0
Y2H Array
25416956
Intra DDX39A O00148 TERF1 Homo sapiens P54274
Pull Down
21044950
Intra DDX39A O00148 SAT1 Homo sapiens P21673
Y2H Prey Pooling
25416956
Intra DDX39A O00148 WFS1 Homo sapiens O76024
Y2H Array
32814053
Intra DDX39A O00148 WFS1 Homo sapiens O76024
Y2H Pooling
32814053
Intra DDX39A O00148 WFS1 Homo sapiens O76024
Validated Y2H
32814053
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Hairy Tongue

Overgrowth Of Filiform Papillae

Tongue, Hairy

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Bos taurus DDX39A VGNC VGNC:27964
Felis catus DDX39A VGNC VGNC:61406
Canis familiaris DDX39A VGNC VGNC:39854
Mus musculus DDX39A MGD MGI:1915528
Macaca mulatta DDX39A VGNC VGNC:71651
Rattus norvegicus DDX39A RGD RGD:619920