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  2. CIC - capicua transcriptional repressor Gene

CIC - capicua transcriptional repressor Gene

中文名称:capicua 转录抑制因子

种属: Homo sapiens

同用名: MRD45

基因 ID: 23152 | 基因类型: protein coding

关于 CIC

Cytogenetic location: 19q13.2 Genomic coordinates (GRCh38): 19:42,268,530-42,295,796 (from NCBI)

This gene has 10 transcripts (splice variants), 240 orthologues, 1 paralogue and is associated with 122 phenotypes. Ubiquitous expression in testis (RPKM 16.0), endometrium (RPKM 12.0) and 25 other tissues.

功能概要

由该基因编码的蛋白质是黑腹果蝇 capicua 基因的直向同源物,并且是转录抑制因子高迁移率组 (HMG) -box 超家族的成员。该蛋白质包含一个参与 DNA 结合和核定位的保守 HMG 结构域,以及一个保守的 C 末端。研究表明,该蛋白质的 N 末端区域与 Atxn1 (GeneID:6310) 相互作用,形成转录抑制复合物,体外研究表明,ATXN1 的聚谷氨酰胺扩展可能会改变该复合物的抑制活性。该基因的突变与少突神经胶质瘤 (PMID:21817013) 有关。此外,导致该基因与 DUX4 (GeneID:100288687) 和 FOXO4 (GeneID:4303) 发生基因融合的易位事件与圆形细胞肉瘤有关。在 1、4、6、7、16、20 号染色体和 Y 染色体上发现了该基因的多个假基因。可变剪接导致编码不同异构体的多个转录变体。[RefSeq 提供,2015 年 2 月]

The protein encoded by this gene is an ortholog of the Drosophila melanogaster capicua gene, and is a member of the high mobility group (HMG)-box superfamily of transcriptional repressors. This protein contains a conserved HMG domain that is involved in DNA binding and nuclear localization, and a conserved C-terminus. Studies suggest that the N-terminal region of this protein interacts with Atxn1 (GeneID:6310), to form a transcription repressor complex, and in vitro studies suggest that polyglutamine-expansion of ATXN1 may alter the repressor activity of this complex. Mutations in this gene have been associated with olidogdendrogliomas (PMID:21817013). In addition, translocation events resulting in gene fusions of this gene with both DUX4 (GeneID:100288687) and FOXO4 (GeneID:4303) have been associated with round cell sarcomas. There are multiple pseudogenes of this gene found on chromosomes 1, 4, 6, 7, 16, 20, and the Y chromosome. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Feb 2015]

CIC 基因产物(7)

mRNA Protein Name
NM_001304815.2 NP_001291744.1 protein capicua homolog isoform CIC-L
NM_001379480.1 NP_001366409.1 protein capicua homolog isoform 3
NM_001379482.1 NP_001366411.1 protein capicua homolog isoform 4
NM_001379484.1 NP_001366413.1 protein capicua homolog isoform 5
NM_001379485.1 NP_001366414.1 protein capicua homolog isoform 6
NM_001386298.1 NP_001373227.1 protein capicua homolog isoform CIC-L
NM_015125.5 NP_055940.3 protein capicua homolog isoform CIC-S
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
16713569 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

CIC 蛋白结构

HMG_box

HMG_box: HMG (high mobility group) box (200 - 268)

  • 0
  • 300
  • 600
  • 900
  • 1200
  • 1500
  • 1608 a.a.
蛋白主名 其他名称

protein capicua homolog

CIC 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra CIC Q96RK0 GOLGA2 Homo sapiens Q08379
Y2H Prey Pooling
32296183
Intra CIC Q96RK0 GOLGA2 Homo sapiens Q08379
Y2H Array
32296183
Intra CIC Q96RK0 ATXN1 Homo sapiens P54253
GMS
18337722
Intra CIC Q96RK0 ATXN1 Homo sapiens P54253
Y2H
16713569
Intra CIC Q96RK0 CENPJ Homo sapiens Q9HC77
Pull Down
16713569
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Intellectual Developmental Disorder, Autosomal Dominant 45

MRD45

Mental Retardation, Autosomal Dominant 45

Autosomal Dominant Intellectual Developmental Disorder 45

Autosomal Dominant Mental Retardation 45

Mental Retardation, Autosomal Dominant, Type 45

Autosomal Dominant Non-Syndromic Intellectual Disability
Oligodendroglioma

Oligodendroglial Neoplasm

Oligodendroglial Tumor

Oligodendroglial Tumors

Well Differentiated Oligodendroglioma

Anaplastic Oligodendroglioma
Nk-Cell Enteropathy
Intellectual Developmental Disorder, Autosomal Dominant 30, With Speech Delay And Behavioral Abnormalities

MRD30

Mental Retardation, Autosomal Dominant 30

Intellectual Developmental Disorder, Autosomal Dominant 30

Autosomal Dominant Non-Syndromic Intellectual Disability 30

Autosomal Dominant Intellectual Developmental Disorder 30

Autosomal Dominant Mental Retardation 30

Mental Retardation, Autosomal Dominant, Type 30

Mitochondrial Pyruvate Carrier Deficiency

MPYCD

Coffin-Siris Syndrome 9

Mrd27

CSS9

Mental Retardation, Autosomal Dominant 27

Autosomal Dominant Mental Retardation 27

Autosomal Dominant Non-Syndromic Intellectual Disability 27

Coffin-Siris Syndrome, Type 9

Spinocerebellar Ataxia 1

Spinocerebellar Ataxia Type 1

SCA1

Olivopontocerebellar Atrophy I

Opca1

Opca4

Menzel Type Opca

Schut-Haymaker Type Opca

Spinocerebellar Atrophy I

Opca I

Olivopontocerebellar Atrophy Iv

Opca Iv

Cerebelloparenchymal Disorder I

Cpd1

Olivopontocerebellar Atrophy 1

Cerebelloparenchymal Disorder 1

Olivopontocerebellar Atrophy 4

Spinocerebellar Atrophy 1

Type 1 Spinocerebellar Ataxia

Spinocerebellar Ataxia-1

Ataxia, Spinocerebellar, Type 1

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Canis familiaris CIC VGNC VGNC:39270
Mus musculus CIC MGD MGI:1918972
Macaca mulatta CIC VGNC VGNC:109599
Felis catus CIC VGNC VGNC:60900
Rattus norvegicus CIC RGD RGD:1310706
Bos taurus CIC VGNC VGNC:27363
Macaca fascicularis CIC NCBI NCBI:102146273
Others CIC NCBI