1. Gene
  2. LSM4 - LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated Gene

LSM4 - LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated Gene

中文名称:LSM4 同系物、U6 小核 RNA 和 mRNA 降解相关

种属: Homo sapiens

同用名: GRP; YER112W

基因 ID: 25804 | 基因类型: protein coding

关于 LSM4

Cytogenetic location: 19p13.11 Genomic coordinates (GRCh38): 19:18,306,236-18,323,076 (from NCBI)

This gene has 6 transcripts (splice variants), 196 orthologues and 2 paralogues. Ubiquitous expression in testis (RPKM 22.8), colon (RPKM 19.7) and 25 other tissues.

功能概要

该基因编码 RNA 结合蛋白 LSm 家族的成员。 LSm 蛋白形成稳定的异聚体,特异性结合 U6 snRNA 的 3'-末端寡核苷酸 (U) 束,并可能通过介导 U4/U6 snRNP 形成在 pre-mRNA 剪接中发挥作用。已经观察到该基因编码多种亚型的可变剪接转录物变体。[RefSeq 提供,2011 年 11 月]

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Nov 2011]

LSM4 基因产物(2)

mRNA Protein Name
NM_001252129.2 NP_001239058.1 U6 snRNA-associated Sm-like protein LSm4 isoform 2
NM_012321.5 NP_036453.1 U6 snRNA-associated Sm-like protein LSm4 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables PH domain binding IDA
IDA: 通过直接分析推断
15905169 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
15231747 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in mRNA splicing, via spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of Lsm2-8 complex IDA
IDA: 通过直接分析推断
10523320 GOA
part of U2-type precatalytic spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
part of U4/U6 x U5 tri-snRNP complex IDA
IDA: 通过直接分析推断
26912367 GOA
part of U4/U6 x U5 tri-snRNP complex IPI
IPI: 通过物理相互作用推断
30975767 GOA
located in cytosol IDA
IDA: 通过直接分析推断
15905169 GOA
located in membrane IDA
IDA: 通过直接分析推断
15905169 GOA
located in nucleus IDA
IDA: 通过直接分析推断
26912367 GOA
part of protein-containing complex IDA
IDA: 通过直接分析推断
15905169 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

LSM4 蛋白结构

LSM

LSM: LSM domain (6 - 69)

  • 0
  • 100
  • 139 a.a.
蛋白主名 其他名称

U6 snRNA-associated Sm-like protein LSm4

LSM4 U6 small nuclear RNA and mRNA degradation associated

LSM4 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
LSM4 Q9Y4Z0 ZBTB10 Homo sapiens Q96DT7 25416956
种属内
LSM4 Q9Y4Z0 ZBTB10 Homo sapiens Q96DT7 25416956
种属内
LSM4 Q9Y4Z0 PSTPIP1 Homo sapiens O43586 32296183
种属内
LSM4 Q9Y4Z0 PSTPIP1 Homo sapiens O43586 25416956
种属内
LSM4 Q9Y4Z0 PSTPIP1 Homo sapiens O43586 32296183
种属内
LSM4 Q9Y4Z0 GAS7 Homo sapiens O60861-1 32296183
种属内
LSM4 Q9Y4Z0 GAS7 Homo sapiens O60861-1 32296183
种属内
LSM4 Q9Y4Z0 L3MBTL3 Homo sapiens Q96JM7 25416956
种属内
LSM4 Q9Y4Z0 LSM8 Homo sapiens O95777 33961781
种属内
LSM4 Q9Y4Z0 LSM8 Homo sapiens O95777
Y2H
15231747
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45 32296183
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45
Y2H
15231747
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45 21988832
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45
Y2H
22365833
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45 33961781
种属内
LSM4 Q9Y4Z0 LSM7 Homo sapiens Q9UK45 32296183
种属内
LSM4 Q9Y4Z0 EXOSC8 Homo sapiens Q96B26 32296183
种属内
LSM4 Q9Y4Z0 EXOSC8 Homo sapiens Q96B26 32296183
种属内
LSM4 Q9Y4Z0 CALCOCO2 Homo sapiens Q13137 25416956
种属内
LSM4 Q9Y4Z0 CALCOCO2 Homo sapiens Q13137 32296183
种属内
LSM4 Q9Y4Z0 CALCOCO2 Homo sapiens Q13137 32296183
种属内
LSM4 Q9Y4Z0 IKZF1 Homo sapiens Q13422 25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

重组 LSM4 蛋白

目录号 产品名 蛋白编号 纯度
HY-P70944 LSM4 Protein, Human (His) Q9Y4Z0 (M1-Q139) ≥95%

关联疾病

疾病名称 别名
Trombiculiasis
Muscular Atrophy

Muscle Wasting

Amyotrophia

Wasting - Muscle

Skeletal Muscle Atrophy

Tick Infestation

Tick Infestations

Spinal Muscular Atrophy

Sma

5q Sma

Proximal Sma

Sma-Associated Sma

Spinal Amyotrophies

Spinal Amyotrophy

Spinal Muscle Degeneration

Spinal Muscle Wasting

Muscular Atrophy Spinal

Atrophy, Muscular, Spinal

Hereditary Motor Neuronopathy

Progressive Muscular Atrophy

Sma - [Spinal Muscular Atrophy]

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Bos taurus LSM4 VGNC VGNC:31056
Canis familiaris LSM4 VGNC VGNC:42844
Felis catus LSM4 VGNC VGNC:102631
Rattus norvegicus LSM4 RGD RGD:1306808
Macaca mulatta LSM4 VGNC VGNC:74304
Mus musculus LSM4 MGD MGI:1354692
Others LSM4 NCBI