1. Gene
  2. SF3B3 - splicing factor 3b subunit 3 Gene

SF3B3 - splicing factor 3b subunit 3 Gene

中文名称:剪接因子 3b 亚基 3

种属: Homo sapiens

同用名: RSE1; SAP130; SF3b130; STAF130

基因 ID: 23450 | 基因类型: protein coding

关于 SF3B3

Cytogenetic location: 16q22.1 Genomic coordinates (GRCh38): 16:70,523,816-70,577,668 (from NCBI)

This gene has 15 transcripts (splice variants), 209 orthologues and 2 paralogues. Ubiquitous expression in ovary (RPKM 13.7), lymph node (RPKM 13.6) and 25 other tissues.

功能概要

该基因编码剪接因子 3b 蛋白复合物的第 3 亚基。剪接因子 3b 与剪接因子 3a 和一个 12S RNA 单元一起形成 U2 小核糖核蛋白复合物 (U2 snRNP) 。剪接因子 3b/3a 复合物以序列独立的方式结合内含子分支位点上游的前体 mRNA,并可能将 U2 snRNP 锚定到前体 mRNA。剪接因子 3b 也是较小的 U12 型剪接体的一个组成部分。亚基 3 也被确定为 STAGA (SPT3-TAF (II) 31-GCN5L 乙酰化酶) 转录共激活因子-HAT (组蛋白乙酰转移酶) 复合物和 TFTC (无 TATA 结合蛋白的 TAF (II) -含复合物) 。这些复合物可能在染色质修饰、转录、剪接和 DNA 修复中起作用。[RefSeq 提供,2008 年 7 月]

This gene encodes subunit 3 of the splicing factor 3b protein complex. Splicing factor 3b, together with splicing factor 3a and a 12S RNA unit, forms the U2 small nuclear ribonucleoproteins complex (U2 snRNP). The splicing factor 3b/3a complex binds pre-mRNA upstream of the intron's branch site in a sequence independent manner and may anchor the U2 snRNP to the pre-mRNA. Splicing factor 3b is also a component of the minor U12-type spliceosome. Subunit 3 has also been identified as a component of the STAGA (SPT3-TAF(II)31-GCN5L acetylase) transcription coactivator-HAT (Histone Acetyltransferase) complex, and the TFTC (TATA-binding-protein-free TAF(II)-containing complex). These complexes may function in chromatin modification, transcription, splicing, and DNA repair. [provided by RefSeq, Jul 2008]

SF3B3 基因产物(1)

mRNA Protein Name
NM_012426.5 NP_036558.3 splicing factor 3B subunit 3
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
17332742 GOA
enables protein-containing complex binding IPI
IPI: 通过物理相互作用推断
11564863 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in mRNA splicing, via spliceosome IDA
IDA: 通过直接分析推断
27720643 GOA
involved in negative regulation of protein catabolic process IDA
IDA: 通过直接分析推断
23951410 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of U12-type spliceosomal complex IDA
IDA: 通过直接分析推断
15146077 GOA
part of U2-type precatalytic spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
part of U2-type spliceosomal complex IDA
IDA: 通过直接分析推断
32494006 GOA
part of U2-type spliceosomal complex IPI
IPI: 通过物理相互作用推断
27720643 GOA
part of catalytic step 2 spliceosome IDA
IDA: 通过直接分析推断
11991638 GOA
located in nucleus IDA
IDA: 通过直接分析推断
27720643 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

SF3B3 蛋白结构

MMS1_N

MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term (76 - 592)

CPSF_A

CPSF_A: CPSF A subunit region (863 - 1183)

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  • 1217 a.a.
蛋白主名 其他名称

splicing factor 3B subunit 3

SAP 130

直系同源

种属 基因名 来源 基因 ID
Macaca mulatta SF3B3 VGNC VGNC:77181
Bos taurus SF3B3 VGNC VGNC:34511
Felis catus SF3B3 VGNC VGNC:65057
Rattus norvegicus SF3B3 RGD RGD:1311636
Mus musculus SF3B3 MGD MGI:1289341
Canis familiaris SF3B3 VGNC VGNC:46071
Others SF3B3 NCBI