1. Gene
  2. PHGDH - phosphoglycerate dehydrogenase Gene

PHGDH - phosphoglycerate dehydrogenase Gene

中文名称:磷酸甘油酸脱氢酶

种属: Homo sapiens

同用名: NLS; PDG; PGD; NLS1; PGAD; PGDH; SERA; 3PGDH; 3-PGDH; PHGDHD; HEL-S-113

基因 ID: 26227 | 基因类型: protein coding

关于 PHGDH

Cytogenetic location: 1p12 Genomic coordinates (GRCh38): 1:119,711,934-119,744,215 (from NCBI)

This gene has 34 transcripts (splice variants), 217 orthologues, 3 paralogues and is associated with 5 phenotypes. Broad expression in fat (RPKM 36.0), skin (RPKM 33.6) and 23 other tissues.

功能概要

该基因编码参与动物细胞 L-丝氨酸合成早期步骤的酶。 D-丝氨酸和其他氨基酸合成需要 L-丝氨酸。该酶需要 NAD/NADH 作为辅助因子并形成同源四聚体以发挥活性。在一个患有先天性小头畸形、精神运动迟缓和其他症状的家族中发现了该基因的突变。已发现多个选择性剪接的转录本变体,但大多数的全长性质尚不清楚。[RefSeq 提供,2011 年 8 月]

This gene encodes the Enzyme which is involved in the early steps of L-serine synthesis in animal cells. L-serine is required for D-serine and Other amino acid synthesis. The Enzyme requires NAD/NADH as a cofactor and forms homotetramers for activity. Mutations in this gene have been found in a family with congenital microcephaly, psychomotor retardation and Other symptoms. Multiple alternatively spliced transcript variants have been found, however the full-length nature of most are not known. [provided by RefSeq, Aug 2011]

PHGDH 基因产物(9)

mRNA Protein Name
XM_047417680.1 XP_047273636.1 D-3-phosphoglycerate dehydrogenase isoform X4
XM_011541228.3 XP_011539530.1 D-3-phosphoglycerate dehydrogenase isoform X3
XM_011541227.3 XP_011539529.1 D-3-phosphoglycerate dehydrogenase isoform X2
XM_047417682.1 XP_047273638.1 D-3-phosphoglycerate dehydrogenase isoform X5
NM_032692.1
XM_011541226.3 XP_011539528.1 D-3-phosphoglycerate dehydrogenase isoform X1
XM_047417683.1 XP_047273639.1 D-3-phosphoglycerate dehydrogenase isoform X6
NM_006623.4 NP_006614.2 D-3-phosphoglycerate dehydrogenase
XR_007058634.1
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
25036637 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PHGDH 蛋白结构

2-Hacid_dh

2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (9 - 317)

2-Hacid_dh_C

2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (112 - 285)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 500
  • 533 a.a.
蛋白主名 其他名称

D-3-phosphoglycerate dehydrogenase

2-oxoglutarate reductase

3-phosphoglycerate dehydrogenase

epididymis secretory protein Li 113

malate dehydrogenase

PHGDH 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PHGDH O43175 EPN1 Homo sapiens Q9Y6I3 25036637
种属内
PHGDH O43175 EPN1 Homo sapiens Q9Y6I3 33961781
种属内
PHGDH O43175 EPN1 Homo sapiens Q9Y6I3 35271311
种属间: 跨种属相互作用 种属内: 同种属相互作用

重组 PHGDH 蛋白

目录号 产品名 蛋白编号 纯度
HY-P74633A PHGDH Protein, Human (C-His) O43175 (M1-F533) ≥95%

关联疾病

疾病名称 别名
Retinitis Pigmentosa 61

RP61

Retinitis Pigmentosa, Type 61

Phosphoglycerate Dehydrogenase Deficiency

Phgdh Deficiency

3-Phosphoglycerate Dehydrogenase Deficiency

PHGDHD

3-Pgdh Deficiency

3-Phosphoglycerate Dehydrogenase Deficiency, Infantile/Juvenile Form

Phgdh Deficiency, Infantile/Juvenile Form

Deficiency, Phosphoglycerate Dehydrogenase

Short-Rib Thoracic Dysplasia 2 With Or Without Polydactyly

Asphyxiating Thoracic Dystrophy 2

SRTD2

Atd2

Jatd

Jeune Asphyxiating Thoracic Dystrophy

Jeune Syndrome 2

Neu-Laxova Syndrome Due To 3-Phosphoglycerate Dehydrogenase Deficiency

3-Phosphoglycerate Dehydrogenase Deficiency, Prenatal Form

Microcephaly

Microencephaly

Microcephalus

Microcephalic

Nanocephaly

Congenital Microcephaly

Brain Hypoplasia

Brain Nondevelopment

Cephalic Hypoplasia

Undeveloped Cerebrum

Undeveloped Brain

Micrencephalon

Micrencephaly

Ichthyosis

Ichthyoses

Non-Syndromic Ichthyosis

Congenital Ichthyosis

Ectropion

Ectropion Of Eyelid

Everted Margin

Eversion Of The Eyelid

Eyelashes Turned Out

Eyelid Everted

Eyelid Turned Out

Unspecified Ectropion Of Unspecified Eye

Retinitis Pigmentosa

RP

Rod-Cone Dystrophy

Autosomal Recessive Retinitis Pigmentosa

Non-Syndromic Retinitis Pigmentosa

Pericentral Pigmentary Retinopathy

Pigmentary Retinopathy

Tapetoretinal Degeneration

Rcd

Retinitis Pigmentosa Autosomal Recessive

ARRP

Retinitis Pigmentosa, Autosomal Recessive

Retinitis Pigmentosa 1

Amyotrophic Lateral Sclerosis 1

Amyotrophic Lateral Sclerosis

ALS

Lou Gehrig Disease

Amyotrophic Lateral Sclerosis Type 1

Charcot Disease

ALS1

Amyotrophic Lateral Sclerosis, Susceptibility To

Fals

Lou Gehrig'S Disease

Mnd

Motor Neuron Disease

Familial Amyotrophic Lateral Sclerosis

Amyotrophic Lateral Sclerosis 1, Familial

Amyotrophic Lateral Sclerosis 1, Autosomal Dominant

Motor Neuron Disease, Bulbar

Motor Neurone Disease

Amyotrophic Lateral Sclerosis With Dementia

Dementia With Amyotrophic Lateral Sclerosis

Motor Neuron Disease, Amyotrophic Lateral Sclerosis

Sclerosis, Lateral, Amyotrophic

Sclerosis, Lateral, Amyotrophic, Type 1

Amyotrophic Sclerosis

Als - [Amyotrophic Lateral Sclerosis]

Wasting Palsy

Amyotrophic Paralysis

Amyotrophy Lateral Sclerosis

Wasting Paralysis

Spinal Progressive Amyotrophy

Progressive Atrophic Paralysis

Phosphoserine Aminotransferase Deficiency

Psat Deficiency

PSATD

Phosphoserine Aminotransferase Deficiency, Infantile/Juvenile Form

Psat Deficiency, Infantile/Juvenile Form

Deficiency, Phosphoserine Aminotransferase

Neu-Laxova Syndrome 1

Neu-Laxova Syndrome

NLS1

Nls

Neu Laxova Syndrome

3-Phosphoglycerate Dehydrogenase Deficiency, Neonatal Form

Lissencephaly

Pachygyria

Broad Gyri Of Cerebrum

Large Gyri Of Cerebrum

Macrogyria

Serine Deficiency
Familial Thyroid Dyshormonogenesis

Thyroid Dyshormonogenesis

Familial Dyshormonogenetic Goiter

Split-Hand/Foot Malformation 2

SHFM2

Shfd2

Shsf2

Split Hand/Foot Malformation 2

Split Hand-Foot Malformation 2

Split-Hand/Split-Foot Anomaly, X-Linked

Split-Hand/Foot Deformity 2

Split Hand/Foot Malformation X-Linked

Split Hand Foot Anomaly - X-Linked

Split Hand Foot Deformity 2

Breast Cancer

Breast Carcinoma

Breast Cancer, Familial

Malignant Neoplasm Of Breast

Male Breast Cancer

Breast Cancer, Susceptibility To

Breast Cancer, Early-Onset

Malignant Tumor Of Breast

Carcinoma Of Male Breast

Breast Cancer, Invasive Ductal

Breast Cancer, Protection Against

Breast Cancer, Somatic

Breast Cancer, Male

Breast Cancer, Lobular, Somatic

Breast Tumor

Mammary Cancer

Mammary Tumor

Malignant Neoplasm Of Male Breast

Mammary Carcinoma

Male Breast Carcinoma

Familial Cancer Of Breast

Invasive Ductal Breast Carcinoma

Breast Cancer Susceptibility

Breast Cancer, Male, Susceptibility To

Breast Cancer, Early-Onset, Susceptibility To

Malignant Tumor Of The Breast

Mammary Neoplasm

Primary Breast Cancer

Neoplasm Of Male Breast

Carcinoma Of Breast

Breast Cancer In Men

Familial Breast Cancer

Cancer Of Breast

BC

Breast Cancer Familial

Breast Cancer Familial Male

Breast Cancer, Familial Male

Breast Male Carcinoma

Breast Neoplasms

Breast Neoplasms, Male

Mammary Tumors

Mammary Carcinomas

Cancer, Breast

Cancer, Breast, Susceptibility

Invasive Breast Ductal Carcinoma

Breast Neoplasm

Susceptibility To Breast Cancer

Mammary Neoplasms

Animal Mammary Neoplasms

Primary Malignant Neoplasm Of Breast

Infiltrating Ductal Carcinoma Of Breast

Infiltrating Duct Carcinoma Of Unspecified Site

Infiltrating Ductular Carcinoma Of Unspecified Site

Invasive Breast Carcinoma Of No Special Type

Microinvasive Carcinoma Of Breast

Carcinoma With Apocrine Differentiation

Cerebellar Hypoplasia
Congenital Nervous System Abnormality

Congenital Neurologic Anomaly

Congenital Nervous System Disorder

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Macaca mulatta PHGDH VGNC VGNC:75976
Rattus norvegicus PHGDH RGD RGD:61987
Felis catus PHGDH VGNC VGNC:68824
Bos taurus PHGDH VGNC VGNC:55654
Mus musculus PHGDH MGD MGI:1355330
Others PHGDH NCBI