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  3. Chemical Proteomics and Structural Biology Define EPHA2 Inhibition by Clinical Kinase Drugs

Chemical Proteomics and Structural Biology Define EPHA2 Inhibition by Clinical Kinase Drugs

  • ACS Chem Biol. 2016 Dec 16;11(12):3400-3411. doi: 10.1021/acschembio.6b00709.
Stephanie Heinzlmeir 1 2 3,  Denis Kudlinzki 4 2 3,  Sridhar Sreeramulu 4,  Susan Klaeger 1 2 3,  Santosh Lakshmi Gande 4 2 3,  Verena Linhard 4,  Mathias Wilhelm 1,  Huichao Qiao 1,  Dominic Helm 1,  Benjamin Ruprecht 1,  Krishna Saxena 4 2 3,  Guillaume Médard 1,  Harald Schwalbe 4 2 3,  Bernhard Kuster 1 2 3 5 6
Affiliations

Affiliations

  • 1 Chair of Proteomics and Bioanalytics, Technical University of Munich , 85354 Freising, Germany.
  • 2 German Cancer Consortium (DKTK) , 69120 Heidelberg, Germany.
  • 3 German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany.
  • 4 Center for Biomolecular Magnetic Resonance, Johann Wolfgang Goethe University , 60438 Frankfurt, Germany.
  • 5 Center for Integrated Protein Science Munich (CIPSM) , 85354 Freising, Germany.
  • 6 Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), Technical University of Munich , 85354 Freising, Germany.
PMID: 27768280 DOI: 10.1021/acschembio.6b00709
Abstract

The receptor tyrosine kinase EphA2 (Ephrin type-A receptor 2) plays important roles in oncogenesis, metastasis, and treatment resistance, yet therapeutic targeting, drug discovery, or investigation of EphA2 biology is hampered by the lack of appropriate inhibitors and structural information. Here, we used chemical proteomics to survey 235 clinical kinase inhibitors for their kinase selectivity and identified 24 drugs with submicromolar affinities for EphA2. NMR-based conformational dynamics together with nine new cocrystal structures delineated drug-EPHA2 interactions in full detail. The combination of selectivity profiling, structure determination, and kinome wide sequence alignment allowed the development of a classification system in which Amino acids in the drug binding site of EphA2 are categorized into key, scaffold, potency, and selectivity residues. This scheme should be generally applicable in kinase drug discovery, and we anticipate that the provided information will greatly facilitate the development of selective EphA2 inhibitors in particular and the repurposing of clinical kinase inhibitors in general.

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