1. Gene
  2. SYNCRIP - synaptotagmin binding cytoplasmic RNA interacting protein Gene

SYNCRIP - synaptotagmin binding cytoplasmic RNA interacting protein Gene

中文名称:突触结合蛋白结合细胞质 RNA 相互作用蛋白

种属: Homo sapiens

同用名: PP68; NSAP1; GRYRBP; HNRNPQ; HNRPQ1; GRY-RBP; hnRNP-Q

基因 ID: 10492 | 基因类型: protein coding

关于 SYNCRIP

Cytogenetic location: 6q14.3 Genomic coordinates (GRCh38): 6:85,607,784-85,643,870 (from NCBI)

This gene has 21 transcripts (splice variants), 279 orthologues, 24 paralogues and is associated with 2 phenotypes. Ubiquitous expression in thyroid (RPKM 21.7), appendix (RPKM 18.1) and 25 other tissues.

功能概要

该基因编码细胞异质核核糖核蛋白 (hnRNP) 家族的成员。 hnRNPs 是 RNA 结合蛋白,与异质核 RNA (hnRNA) 复合并调节选择性剪接、聚腺苷酸化以及 mRNA 代谢和运输的其他方面。编码的蛋白质在 mRNA 成熟的多个方面发挥作用,并与几种多蛋白复合物相关,包括 apoB RNA 编辑复合物和运动神经元存活 (SMN) 复合物。已经观察到该基因编码多种亚型的可变剪接转录变体,并且该基因的假基因位于 20 号染色体的短臂上。[RefSeq 提供,2011 年 12 月]

This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and Other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011]

SYNCRIP 基因产物(8)

mRNA Protein Name
NM_001159673.2 NP_001153145.1 heterogeneous nuclear ribonucleoprotein Q isoform 2
NM_001159674.2 NP_001153146.1 heterogeneous nuclear ribonucleoprotein Q isoform 3
NM_001159675.1 NP_001153147.1 heterogeneous nuclear ribonucleoprotein Q isoform 4
NM_001159676.1 NP_001153148.1 heterogeneous nuclear ribonucleoprotein Q isoform 5
NM_001159677.2 NP_001153149.1 heterogeneous nuclear ribonucleoprotein Q isoform 6
NM_001253771.2 NP_001240700.1 heterogeneous nuclear ribonucleoprotein Q isoform 7
NM_001410938.1 NP_001397867.1 heterogeneous nuclear ribonucleoprotein Q isoform 8
NM_006372.5 NP_006363.4 heterogeneous nuclear ribonucleoprotein Q isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
12674497 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of CRD-mediated mRNA stability complex IDA
IDA: 通过直接分析推断
19029303 GOA
part of CRD-mediated mRNA stability complex IPI
IPI: 通过物理相互作用推断
19029303 GOA
part of GAIT complex IDA
IDA: 通过直接分析推断
15479637 GOA
part of catalytic step 2 spliceosome IDA
IDA: 通过直接分析推断
11991638 GOA
located in cytosol IDA
IDA: 通过直接分析推断
11051545 GOA
part of mCRD-mediated mRNA stability complex IPI
IPI: 通过物理相互作用推断
11051545 GOA
located in nucleus IDA
IDA: 通过直接分析推断
12881431 GOA
part of ribonucleoprotein complex IDA
IDA: 通过直接分析推断
15479637 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

SYNCRIP 蛋白结构

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (164 - 229)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (245 - 306)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (340 - 401)

  • 0
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  • 500
  • 623 a.a.
蛋白主名 其他名称

heterogeneous nuclear ribonucleoprotein Q

NS1-associated protein 1

SYNCRIP 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
SYNCRIP O60506 PRMT8 Homo sapiens Q9NR22-2
Y2H Prey Pooling
25416956
种属内
SYNCRIP O60506 HNRNPD Homo sapiens Q14103-4
Y2H
12674497
种属内
SYNCRIP O60506 HABP4 Homo sapiens Q5JVS0
Pull Down
19523114
种属内
SYNCRIP O60506 HABP4 Homo sapiens Q5JVS0
Y2H
19523114
种属内
SYNCRIP O60506 PRMT8 Homo sapiens Q9NR22
Y2H Array
29892012
种属内
SYNCRIP O60506 PRMT1 Homo sapiens Q99873
Y2H
23455924
种属内
SYNCRIP O60506 PRMT1 Homo sapiens Q99873
Anti Tag CoIP
23455924
种属间: 跨种属相互作用 种属内: 同种属相互作用

SYNCRIP 抗体

目录号 产品名 应用 反应物种
HY-P82093 hnRNP Q Antibody (YA1838) WB, IHC-P, ICC/IF Human, Mouse, Rat

关联疾病

疾病名称 别名
Non-Specific Syndromic Intellectual Disability

Complex Neurodevelopmental Disorder

Spinal Muscular Atrophy

Sma

5q Sma

Proximal Sma

Sma-Associated Sma

Spinal Amyotrophies

Spinal Amyotrophy

Spinal Muscle Degeneration

Spinal Muscle Wasting

Muscular Atrophy Spinal

Atrophy, Muscular, Spinal

Hereditary Motor Neuronopathy

Progressive Muscular Atrophy

Sma - [Spinal Muscular Atrophy]

Myoblastoma

Benign Granular Cell Tumor

Muscular Atrophy

Muscle Wasting

Amyotrophia

Wasting - Muscle

Skeletal Muscle Atrophy

Treacher Collins Syndrome 1

Treacher Collins Syndrome

Mandibulofacial Dysostosis

Treacher Collins-Franceschetti Syndrome

Tcof

Tcs

Mfd1

Franceschetti-Klein Syndrome

TCS1

Franceschetti Syndrome

Franceschetti-Zwahlen-Klein Syndrome

Zygoauromandibular Dysplasia

Treacher-Collins Syndrome

Mandibulofacial Dysostosis Without Limb Anomalies

Bilateral And Symmetric Oto-Mandibular Dysplasia

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Mus musculus SYNCRIP MGD MGI:1891690
Canis familiaris SYNCRIP VGNC VGNC:47024
Rattus norvegicus SYNCRIP RGD RGD:1305683
Felis catus SYNCRIP VGNC VGNC:65881
Bos taurus SYNCRIP VGNC VGNC:35518
Macaca mulatta SYNCRIP VGNC VGNC:78141