1. Gene
  2. TRIM3 - tripartite motif containing 3 Gene

TRIM3 - tripartite motif containing 3 Gene

中文名称:含三方基序 3

种属: Homo sapiens

同用名: BERP; HAC1; RNF22; RNF97

基因 ID: 10612 | 基因类型: protein coding

关于 TRIM3

Cytogenetic location: 11p15.4 Genomic coordinates (GRCh38): 11:6,448,613-6,474,459 (from NCBI)

This gene has 14 transcripts (splice variants), 266 orthologues and 80 paralogues. Ubiquitous expression in duodenum (RPKM 6.6), small intestine (RPKM 6.1) and 25 other tissues.

功能概要

该基因编码的蛋白质是三联基序 (TRIM) 家族的成员,也称为 RING 指蛋白的“RING-B-box-coiled-coil” (RBCC) 亚组。 TRIM 基序包括三个锌结合域、一个 RING、一个 B-box 类型 1 和一个 B-box 类型 2,以及一个卷曲螺旋区域。这种蛋白质定位于细胞质丝。它类似于大鼠蛋白,它是肌球蛋白 V 尾部结构域的特定伙伴,肌球蛋白 V 是一类参与细胞器靶向运输的肌球蛋白。大鼠蛋白还可以与 alpha-actinin-4 相互作用。因此表明这种人类蛋白质可能在肌球蛋白 V 介导的货物运输中发挥作用。已经鉴定出编码相同亚型的可变剪接转录本变体。[RefSeq 提供,2008 年 7 月]

The protein encoded by this gene is a member of the tripartite motif (TRIM) family, also called the 'RING-B-box-coiled-coil' (RBCC) subgroup of RING finger proteins. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This protein localizes to cytoplasmic filaments. It is similar to a rat protein which is a specific partner for the tail domain of Myosin V, a class of myosins which are involved in the targeted transport of organelles. The rat protein can also interact with alpha-actinin-4. Thus it is suggested that this human protein may play a role in Myosin V-mediated cargo transport. Alternatively spliced transcript variants encoding the same isoform have been identified. [provided by RefSeq, Jul 2008]

TRIM3 基因产物(4)

mRNA Protein Name
NM_001248006.2 NP_001234935.1 tripartite motif-containing protein 3 isoform 1
NM_001248007.2 NP_001234936.1 tripartite motif-containing protein 3 isoform 2
NM_006458.4 NP_006449.2 tripartite motif-containing protein 3 isoform 1
NM_033278.4 NP_150594.2 tripartite motif-containing protein 3 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables identical protein binding IPI
IPI: 通过物理相互作用推断
32296183 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
19460345 GOA
enables ubiquitin protein ligase activity IDA
IDA: 通过直接分析推断
32878999 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in neural precursor cell proliferation IMP
IMP: 通过突变表型推断
38225354 GOA
involved in positive regulation of toll-like receptor 3 signaling pathway IDA
IDA: 通过直接分析推断
32878999 GOA
involved in protein K63-linked ubiquitination IDA
IDA: 通过直接分析推断
32878999 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
is active in Golgi apparatus IDA
IDA: 通过直接分析推断
32878999 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

TRIM3 蛋白结构

zf-C3HC4

zf-C3HC4: Zinc finger, C3HC4 type (RING finger) (22 - 62)

zf-B_box

zf-B_box: B-box zinc finger (113 - 150)

Filamin

Filamin: Filamin/ABP280 repeat (321 - 415)

NHL

NHL: NHL repeat (486 - 513)

NHL

NHL: NHL repeat (533 - 560)

NHL

NHL: NHL repeat (577 - 602)

NHL

NHL: NHL repeat (622 - 649)

NHL

NHL: NHL repeat (669 - 696)

NHL

NHL: NHL repeat (713 - 737)

  • 0
  • 200
  • 400
  • 600
  • 744 a.a.
蛋白主名 其他名称

tripartite motif-containing protein 3

RING finger protein 97

TRIM3 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra TRIM3 O75382 UBE2I Homo sapiens Q7KZS0
Y2H Array
32296183
Intra TRIM3 O75382 UBE2I Homo sapiens Q7KZS0
Y2H Prey Pooling
32296183
Intra TRIM3 O75382 UBE2I Homo sapiens Q7KZS0
Validated Y2H
32296183
Intra TRIM3 O75382 KCTD7 Homo sapiens Q96MP8-2
Y2H Prey Pooling
32296183
Intra TRIM3 O75382 KCTD7 Homo sapiens Q96MP8-2
Validated Y2H
32296183
Intra TRIM3 O75382 KCTD7 Homo sapiens Q96MP8-2
Y2H Array
32296183
Intra TRIM3 O75382 TEAD1 Homo sapiens P28347-2
Validated Y2H
32296183
Intra TRIM3 O75382 USP32 Homo sapiens Q8NFA0-2
Validated Y2H
32296183
Intra TRIM3 O75382 ROPN1 Homo sapiens Q9HAT0
Validated Y2H
32296183
Intra TRIM3 O75382 MYO5B Homo sapiens Q9ULV0-2
Validated Y2H
32296183
Intra TRIM3 O75382 UBE2E2 Homo sapiens Q96LR5
Validated Y2H
32296183
Intra TRIM3 O75382 TRIM2 Homo sapiens Q9C040
Validated Y2H
32296183
Intra TRIM3 O75382 UBE2Z Homo sapiens Q9H832
Validated Y2H
32296183
Intra TRIM3 O75382 CEP70 Homo sapiens Q8NHQ1
Y2H Prey Pooling
32296183
Intra TRIM3 O75382 CEP70 Homo sapiens Q8NHQ1
Y2H Array
32296183
Intra TRIM3 O75382 CEP70 Homo sapiens Q8NHQ1
Validated Y2H
32296183
Intra TRIM3 O75382 LNX1 Homo sapiens Q8TBB1
Validated Y2H
32296183
Intra TRIM3 O75382 UBE2D1 Homo sapiens P51668
Validated Y2H
32296183
Intra TRIM3 O75382 CSNK1E Homo sapiens P49674
Validated Y2H
32296183
Intra TRIM3 O75382 ASL Homo sapiens P04424
Validated Y2H
32296183
Intra TRIM3 O75382 ASL Homo sapiens P04424
Y2H Array
32296183
Intra TRIM3 O75382 ASL Homo sapiens P04424
Y2H Prey Pooling
32296183
Intra TRIM3 O75382 CSNK1D Homo sapiens P48730
Validated Y2H
32296183
Intra TRIM3 O75382 TRIM21 Homo sapiens P19474
Validated Y2H
32296183
Intra TRIM3 O75382 TRIM21 Homo sapiens P19474
Y2H Array
32296183
Intra TRIM3 O75382 TRIM21 Homo sapiens P19474
Y2H Prey Pooling
32296183
Intra TRIM3 O75382 LRRC8E Homo sapiens Q6NSJ5
Validated Y2H
32296183
Intra TRIM3 O75382 TEAD2 Homo sapiens Q15562-2
Validated Y2H
32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Felis catus TRIM3 VGNC VGNC:66533
Macaca mulatta TRIM3 VGNC VGNC:78549
Rattus norvegicus TRIM3 RGD RGD:70074
Mus musculus TRIM3 MGD MGI:1860040
Canis familiaris TRIM3 VGNC VGNC:47813
Bos taurus TRIM3 VGNC VGNC:36326
Others TRIM3 NCBI