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  2. HOXC5 - homeobox C5 Gene

HOXC5 - homeobox C5 Gene

中文名称:同源框 C5

种属: Homo sapiens

同用名: CP11; HOX3; HOX3D

基因 ID: 3222 | 基因类型: protein coding

关于 HOXC5

Cytogenetic location: 12q13.13 Genomic coordinates (GRCh38): 12:54,016,888-54,035,361 (from NCBI)

This gene has 1 transcript (splice variant), 194 orthologues and 42 paralogues. Biased expression in ovary (RPKM 1.6), kidney (RPKM 1.3) and 12 other tissues.

功能概要

该基因属于同源盒基因家族。同源框基因编码一个高度保守的转录因子家族,在所有多细胞生物的形态发生中起着重要作用。哺乳动物拥有 4 个相似的同源盒基因簇 HOXA、HOXB、HOXC 和 HOXD,它们分别位于不同的染色体上,由 9~11 个串联排列的基因组成。该基因 HOXC5 是位于 12 号染色体簇中的几个同源框 HOXC 基因之一。三个基因 HOXC5、HOXC4 和 HOXC6 共享一个 5' 非编码外显子。转录本可能包括与基因特异性外显子剪接的共享外显子,或者它们可能仅包括基因特异性外显子。已经为 HOXC5 描述了两种可变剪接变体。包含共享外显子的转录变体显然不编码蛋白质。蛋白质编码转录变体仅包含基因特异性外显子。[RefSeq 提供,2008 年 7 月]

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene, HOXC5, is one of several homeobox HOXC genes located in a cluster on chromosome 12. Three genes, HOXC5, HOXC4 and HOXC6, share a 5' non-coding exon. Transcripts may include the shared exon spliced to the gene-specific exons, or they may include only the gene-specific exons. Two alternatively spliced variants have been described for HOXC5. The transcript variant which includes the shared exon apparently doesn't encode a protein. The protein-coding transcript variant contains gene-specific exons only. [provided by RefSeq, Jul 2008]

HOXC5 基因产物(1)

mRNA Protein Name
NM_018953.4 NP_061826.1 homeobox protein Hox-C5
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
32296183 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

HOXC5 蛋白结构

Homeobox

Homeobox: Homeobox domain (156 - 212)

  • 0
  • 100
  • 200
  • 222 a.a.
蛋白主名 其他名称

homeobox protein Hox-C5

homeo box C5

HOXC5 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra HOXC5 Q00444 CTBP2 Homo sapiens P56545-3
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 CTBP2 Homo sapiens P56545-3
Y2H Array
32296183
Intra HOXC5 Q00444 PBX4 Homo sapiens Q9BYU1
Y2H Array
32296183
Intra HOXC5 Q00444 PBX4 Homo sapiens Q9BYU1
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 PBX4 Homo sapiens Q9BYU1
Validated Y2H
32296183
Intra HOXC5 Q00444 POU6F2 Homo sapiens P78424
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 POU6F2 Homo sapiens P78424
Y2H Array
32296183
Intra HOXC5 Q00444 LHX3 Homo sapiens Q9UBR4-2
Validated Y2H
32296183
Intra HOXC5 Q00444 LHX3 Homo sapiens Q9UBR4-2
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 LHX3 Homo sapiens Q9UBR4-2
Y2H Array
32296183
Intra HOXC5 Q00444 LHX4 Homo sapiens Q969G2
Validated Y2H
32296183
Intra HOXC5 Q00444 LHX4 Homo sapiens Q969G2
Y2H Array
32296183
Intra HOXC5 Q00444 LHX4 Homo sapiens Q969G2
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 PBX1 Homo sapiens P40424
Y2H Array
32296183
Intra HOXC5 Q00444 PBX1 Homo sapiens P40424
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 POLR2G Homo sapiens P62487
Y2H Array
32296183
Intra HOXC5 Q00444 POLR2G Homo sapiens P62487
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 POLR2G Homo sapiens P62487
MAPPIT
32296183
Intra HOXC5 Q00444 PBX2 Homo sapiens P40425
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 PBX2 Homo sapiens P40425
Y2H Array
32296183
Intra HOXC5 Q00444 ZBTB16 Homo sapiens Q05516
Y2H Array
32296183
Intra HOXC5 Q00444 ZBTB16 Homo sapiens Q05516
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 ZBTB16 Homo sapiens Q05516
Validated Y2H
32296183
Intra HOXC5 Q00444 GORASP2 Homo sapiens Q9H8Y8
Validated Y2H
32296183
Intra HOXC5 Q00444 GORASP2 Homo sapiens Q9H8Y8
Y2H Array
32296183
Intra HOXC5 Q00444 GORASP2 Homo sapiens Q9H8Y8
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 DVL3 Homo sapiens Q92997
Y2H Prey Pooling
32296183
Intra HOXC5 Q00444 DVL3 Homo sapiens Q92997
Y2H Array
32296183
Intra HOXC5 Q00444 DVL3 Homo sapiens Q92997
Validated Y2H
32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Lymphoma, Non-Hodgkin, Familial

Non-Hodgkin Lymphoma

Lymphoma, Non-Hodgkin

NHL

Lymphoma, Non-Hodgkin, Somatic

Lymphoma, Follicular, Somatic

Familial Non-Hodgkin Lymphoma

Lymphoma Non-Hodgkins

Follicular Lymphoma, Somatic

Lymphosarcoma

Non-Hodgkins Lymphoma

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus HOXC5 RGD RGD:1307584
Bos taurus HOXC5 VGNC VGNC:56208
Mus musculus HOXC5 MGD MGI:96196