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  2. RAB13 - RAB13, member RAS oncogene family Gene

RAB13 - RAB13, member RAS oncogene family Gene

中文名称:RAB13,RAS 致癌基因家族成员

种属: Homo sapiens

同用名: GIG4

基因 ID: 5872 | 基因类型: protein coding

关于 RAB13

Cytogenetic location: 1q21.3 Genomic coordinates (GRCh38): 1:153,981,650-153,990,708 (from NCBI)

This gene has 5 transcripts (splice variants), 169 orthologues and 68 paralogues. Ubiquitous expression in urinary bladder (RPKM 34.2), prostate (RPKM 33.4) and 25 other tissues.

功能概要

该基因是小 G 蛋白 Rab 家族的成员,在调节跨高尔基体网络 (TGN) 和再循环核内体 (RE) 之间的膜运输中发挥作用。编码的蛋白质参与紧密连接的组装,紧密连接是上皮细胞顶端连接复合体 (AJC) 的组成部分。 AJC 在管腔内容物和下层组织之间形成屏障方面发挥作用。与蛋白质相关的其他功能包括 occludin 的内吞循环、上皮细胞分散的调节、神经元再生和神经突长出的调节。已经观察到该基因的交替剪接转录物变体。与该基因相关的假基因位于 12 号染色体上。[RefSeq 提供,2013 年 1 月]

This gene is a member of the Rab family of small G proteins and plays a role in regulating membrane trafficking between trans-Golgi network (TGN) and recycling endosomes (RE). The encoded protein is involved in the assembly of tight junctions, which are components of the apical junctional complex (AJC) of epithelial cells. The AJC plays a role in forming a barrier between luminal contents and the underlying tissue. Additional functions associated with the protein include endocytic recycling of occludin, regulation of epithelial cell scattering, neuronal regeneration and regulation of neurite outgrowth. Alternately spliced transcript variants have been observed for this gene. A pseudogene associated with this gene is located on chromosome 12. [provided by RefSeq, Jan 2013]

RAB13 基因产物(2)

mRNA Protein Name
NM_001272038.2 NP_001258967.1 ras-related protein Rab-13 isoform 2
NM_002870.5 NP_002861.1 ras-related protein Rab-13 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables GTP binding IDA
IDA: 通过直接分析推断
20937701 GOA
enables GTPase activity IDA
IDA: 通过直接分析推断
8294494 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
9712853 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in Golgi to plasma membrane transport IDA
IDA: 通过直接分析推断
35343654 GOA
involved in bicellular tight junction assembly IMP
IMP: 通过突变表型推断
15096524 GOA
involved in endocytic recycling IMP
IMP: 通过突变表型推断
15528189 GOA
involved in endosomal transport IMP
IMP: 通过突变表型推断
18779367 GOA
involved in neuron projection development IMP
IMP: 通过突变表型推断
20008558 GOA
involved in protein kinase A signaling IMP
IMP: 通过突变表型推断
15096524 GOA
involved in protein localization to plasma membrane IMP
IMP: 通过突变表型推断
15096524 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
NOT located in Golgi apparatus IDA
IDA: 通过直接分析推断
18779367 GOA
located in bicellular tight junction IDA
IDA: 通过直接分析推断
8294494 GOA
located in cytoplasmic vesicle IDA
IDA: 通过直接分析推断
8294494 GOA
located in endocytic vesicle IDA
IDA: 通过直接分析推断
15528189 GOA
located in neuron projection IDA
IDA: 通过直接分析推断
20008558 GOA
located in plasma membrane IDA
IDA: 通过直接分析推断
15528189 GOA
located in recycling endosome IDA
IDA: 通过直接分析推断
18779367 GOA
located in trans-Golgi network IDA
IDA: 通过直接分析推断
18779367 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

RAB13 蛋白结构

Ras

Ras: Ras family (10 - 170)

  • 0
  • 100
  • 203 a.a.
蛋白主名 其他名称

ras-related protein Rab-13

RAS-associated protein RAB13

RAB13 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属间
RAB13 P51153 Micall2 Mus musculus Q3TN34
Y2H
16525024
种属间
RAB13 P51153 Micall2 Mus musculus Q3TN34 18332111
种属间
RAB13 P51153 Micall2 Mus musculus Q3TN34 16525024
种属内
RAB13 P51153 PDE6D Homo sapiens O43924 9712853
种属间
RAB13 P51153 Leprotl1 Rattus norvegicus Q6PDU4 23772379
种属间
RAB13 P51153 Leprotl1 Rattus norvegicus Q6PDU4 23772379
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus RAB13 RGD RGD:620880
Canis familiaris RAB13 VGNC VGNC:45253
Bos taurus RAB13 VGNC VGNC:33621
Mus musculus RAB13 MGD MGI:1927232
Macaca mulatta RAB13 VGNC VGNC:106479