1. Gene
  2. PDCD6 - programmed cell death 6 Gene

PDCD6 - programmed cell death 6 Gene

中文名称:程序性细胞死亡 6

种属: Homo sapiens

同用名: ALG2; ALG-2; PEF1B

基因 ID: 10016 | 基因类型: protein coding

关于 PDCD6

Cytogenetic location: 5p15.33 Genomic coordinates (GRCh38): 5:271,646-314,974 (from NCBI)

This gene has 12 transcripts (splice variants), 189 orthologues and 20 paralogues. Ubiquitous expression in colon (RPKM 23.5), adrenal (RPKM 21.4) and 25 other tissues.

功能概要

该基因编码属于 penta-EF-hand 蛋白家族的钙结合蛋白。钙结合对于同二聚化和与其他蛋白质伙伴结合所需的构象变化很重要。该基因产物参与 T 细胞受体、Fas 和糖皮质激素诱导的程序性细胞死亡。然而,在缺乏该基因产物的小鼠中,细胞凋亡未被阻断,表明该基因产物在功能上是多余的。已观察到该基因编码多种亚型的选择性剪接转录变体,该基因的假基因也位于 5 号染色体的短臂上。[RefSeq 提供,2012 年 5 月]

This gene encodes a calcium-binding protein belonging to the penta-EF-hand protein family. Calcium binding is important for homodimerization and for conformational changes required for binding to Other protein partners. This gene product participates in T cell receptor-, Fas-, and glucocorticoid-induced programmed cell death. In mice deficient for this gene product, however, Apoptosis was not blocked suggesting this gene product is functionally redundant. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is also located on the short arm of chromosome 5. [provided by RefSeq, May 2012]

PDCD6 基因产物(5)

mRNA Protein Name
NM_001267556.2 NP_001254485.1 programmed cell death protein 6 isoform 2
NM_001267557.2 NP_001254486.1 programmed cell death protein 6 isoform 3
NM_001267558.2 NP_001254487.1 programmed cell death protein 6 isoform 4
NM_001267559.2 NP_001254488.1 programmed cell death protein 6 isoform 5
NM_013232.4 NP_037364.1 programmed cell death protein 6 isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables calcium ion binding IDA
IDA: 通过直接分析推断
25667979 GOA
enables calcium-dependent protein binding IMP
IMP: 通过突变表型推断
14999017 GOA
enables calcium-dependent protein binding IPI
IPI: 通过物理相互作用推断
12445460 GOA
enables identical protein binding IPI
IPI: 通过物理相互作用推断
16189514 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
11883939 GOA
enables protein dimerization activity IPI
IPI: 通过物理相互作用推断
11883899 GOA
enables protein heterodimerization activity IPI
IPI: 通过物理相互作用推断
11278427 GOA
enables protein homodimerization activity IDA
IDA: 通过直接分析推断
25667979 GOA
enables protein-macromolecule adaptor activity IMP
IMP: 通过突变表型推断
19520058 GOA
enables protein-membrane adaptor activity IMP
IMP: 通过突变表型推断
16957052 GOA
enables ubiquitin-like ligase-substrate adaptor activity IMP
IMP: 通过突变表型推断
27716508 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in COPII vesicle coating IMP
IMP: 通过突变表型推断
27716508 GOA
involved in cellular response to heat IDA
IDA: 通过直接分析推断
21122810 GOA
involved in endoplasmic reticulum to Golgi vesicle-mediated transport IMP
IMP: 通过突变表型推断
27716508 GOA
involved in intracellular protein transport IDA
IDA: 通过直接分析推断
21122810 GOA
involved in negative regulation of TOR signaling IDA
IDA: 通过直接分析推断
21893193 GOA
involved in negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IDA
IDA: 通过直接分析推断
21893193 GOA
involved in negative regulation of vascular endothelial growth factor receptor signaling pathway IDA
IDA: 通过直接分析推断
21893193 GOA
involved in neural crest cell development IMP
IMP: 通过突变表型推断
27716508 GOA
involved in neural crest formation IMP
IMP: 通过突变表型推断
27716508 GOA
involved in positive regulation of angiogenesis IDA
IDA: 通过直接分析推断
21893193 GOA
involved in positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IDA
IDA: 通过直接分析推断
16132846 GOA
involved in positive regulation of endothelial cell migration IDA
IDA: 通过直接分析推断
21893193 GOA
involved in positive regulation of endothelial cell proliferation IDA
IDA: 通过直接分析推断
21893193 GOA
involved in positive regulation of protein monoubiquitination IMP
IMP: 通过突变表型推断
27716508 GOA
involved in response to calcium ion IDA
IDA: 通过直接分析推断
12445460 GOA
involved in vascular endothelial growth factor receptor-2 signaling pathway IDA
IDA: 通过直接分析推断
21893193 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of COPII vesicle coat IDA
IDA: 通过直接分析推断
27716508 GOA
part of Cul3-RING ubiquitin ligase complex IDA
IDA: 通过直接分析推断
27716508 GOA
located in cytoplasm IDA
IDA: 通过直接分析推断
11278427 GOA
located in cytoplasmic vesicle IDA
IDA: 通过直接分析推断
21122810 GOA
located in endoplasmic reticulum IDA
IDA: 通过直接分析推断
17196169 GOA
located in endoplasmic reticulum exit site IDA
IDA: 通过直接分析推断
27813252 GOA
located in endoplasmic reticulum exit site IMP
IMP: 通过突变表型推断
16957052 GOA
located in nucleus IDA
IDA: 通过直接分析推断
11278427 GOA
located in perinuclear region of cytoplasm IDA
IDA: 通过直接分析推断
17196169 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PDCD6 蛋白结构

EF-hand_8

EF-hand_8: EF-hand domain pair (40 - 89)

EF-hand_7

EF-hand_7: EF-hand domain pair (96 - 154)

  • 0
  • 100
  • 191 a.a.
蛋白主名 其他名称

programmed cell death protein 6

apoptosis-linked gene 2 protein homolog

PDCD6 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PDCD6 O75340 KDR Homo sapiens P35968
Anti Bait CoIP
21893193
种属内
PDCD6 O75340 KDR Homo sapiens P35968
Y2H
21893193
种属内
PDCD6 O75340 KDR Homo sapiens P35968
Anti Tag CoIP
21893193
种属内
PDCD6 O75340 ANXA11 Homo sapiens Q5T0G8
Validated Y2H
25416956
种属内
PDCD6 O75340 ANXA11 Homo sapiens Q5T0G8
Y2H Array
25416956
种属内
PDCD6 O75340 ANXA11 Homo sapiens Q5T0G8
Y2H Prey Pooling
25416956
种属内
PDCD6 O75340 SEC31A Homo sapiens O94979
Pull Down
17196169
种属内
PDCD6 O75340 SEC31A Homo sapiens O94979
Anti Tag CoIP
35271311
种属内
PDCD6 O75340 SEC31A Homo sapiens O94979
Confocal
17196169
种属内
PDCD6 O75340 SEC31A Homo sapiens O94979
Pull Down
18256029
种属内
PDCD6 O75340 VPS37C Homo sapiens A5D8V6
Y2H Prey Pooling
25416956
种属内
PDCD6 O75340 VPS37C Homo sapiens A5D8V6
Y2H Array
25416956
种属内
PDCD6 O75340 BAG4 Homo sapiens O95429
Y2H Prey Pooling
32296183
种属内
PDCD6 O75340 BAG4 Homo sapiens O95429
Y2H Array
32296183
种属内
PDCD6 O75340 BAG4 Homo sapiens O95429
Validated Y2H
32296183
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Far-WB
18940611
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Pull Down
18940611
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Far-WB
17196169
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Y2H Array
31515488
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Pull Down
17196169
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
X-Ray Diffraction
18940611
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Pull Down
18256029
种属内
PDCD6 O75340 PDCD6IP Homo sapiens Q8WUM4
Anti Tag CoIP
35271311
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Anti Tag CoIP
35271311
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Y2H Pooling
16189514
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Validated Y2H
32296183
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Y2H Array
25416956
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Y2H
21988832
种属内
PDCD6 O75340 PEF1 Homo sapiens Q9UBV8
Y2H Prey Pooling
25416956
种属内
PDCD6 O75340 DAPK1 Homo sapiens P53355
Y2H
16132846
种属内
PDCD6 O75340 DCTN2 Homo sapiens Q13561
Anti Tag CoIP
26950892
种属内
PDCD6 O75340 ANXA11 Homo sapiens P50995
Y2H Array
31515488
种属内
PDCD6 O75340 PTPN23 Homo sapiens Q9H3S7
Anti Tag CoIP
17174262
种属内
PDCD6 O75340 PTPN23 Homo sapiens Q9H3S7
Y2H
17174262
种属内
PDCD6 O75340 HEBP2 Homo sapiens Q9Y5Z4
Validated Y2H
25416956
种属内
PDCD6 O75340 HEBP2 Homo sapiens Q9Y5Z4
Validated Y2H
32296183
种属内
PDCD6 O75340 HEBP2 Homo sapiens Q9Y5Z4
Y2H Array
25416956
种属内
PDCD6 O75340 HEBP2 Homo sapiens Q9Y5Z4
Anti Tag CoIP
35271311
种属内
PDCD6 O75340 HEBP2 Homo sapiens Q9Y5Z4
Y2H Pooling
16189514
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
Far-WB
18256029
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
Pull Down
18256029
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
ELISA
18256029
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
SPR
18256029
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
Anti Bait CoIP
18256029
种属内
PDCD6 O75340 PLSCR3 Homo sapiens Q9NRY6
Anti Tag CoIP
18256029
种属间: 跨种属相互作用 种属内: 同种属相互作用

PDCD6 抗体

目录号 产品名 应用 反应物种
HY-P81520 PDCD6/ALG-2 Antibody (YA1265) IHC-P Human

关联疾病

疾病名称 别名
Ocular Melanoma

Intraocular Melanoma

Uveal Melanoma

Eye Melanoma

Melanoma Of Eye

Melanoma Of The Uvea

Malignant Melanoma Of Eye

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Bos taurus PDCD6 VGNC VGNC:32663
Canis familiaris PDCD6 VGNC VGNC:44340
Rattus norvegicus PDCD6 RGD RGD:1311239
Felis catus PDCD6 VGNC VGNC:102284
Mus musculus PDCD6 MGD MGI:109283
Others PDCD6 NCBI