1. Gene
  2. CPSF4 - cleavage and polyadenylation specific factor 4 Gene

CPSF4 - cleavage and polyadenylation specific factor 4 Gene

中文名称:裂解和聚腺苷酸化特异性因子 4

种属: Homo sapiens

同用名: NAR; NEB1; NEB-1; CPSF30

基因 ID: 10898 | 基因类型: protein coding

关于 CPSF4

Cytogenetic location: 7q22.1 Genomic coordinates (GRCh38): 7:99,438,943-99,457,373 (from NCBI)

This gene has 13 transcripts (splice variants), 208 orthologues and 2 paralogues. Ubiquitous expression in testis (RPKM 7.2), lymph node (RPKM 4.8) and 25 other tissues.

功能概要

抑制由甲型流感病毒 NS1 蛋白引起的含有 poly (A) 的 mRNA 的核输出需要其效应域。 NS1 效应域在功能上与裂解的细胞 30 kDa 亚基和聚腺苷酸化特异性因子 4 相互作用,后者是细胞前体 mRNA 3' 末端加工机制的重要组成部分。在流感病毒感染的细胞中,NS1 蛋白与切割和聚腺苷酸化特异性因子 4、30kD 亚基物理相关。 NS1 蛋白在体外与 30 kDa 蛋白的结合可防止 CPSF 与 RNA 底物结合,并抑制宿主前体 mRNA 的 3' 端切割和聚腺苷酸化。因此,NS1 蛋白选择性地抑制细胞而非病毒 mRNA 的核输出。已针对该基因描述了编码不同亚型的多个选择性剪接转录物变体。[RefSeq 提供,2008 年 7 月]

Inhibition of the nuclear export of poly(A)-containing mRNAs caused by the influenza A virus NS1 protein requires its effector domain. The NS1 effector domain functionally interacts with the cellular 30 kDa subunit of cleavage and polyadenylation specific factor 4, an essential component of the 3' end processing machinery of cellular pre-mRNAs. In influenza virus-infected cells, the NS1 protein is physically associated with cleavage and polyadenylation specific factor 4, 30kD subunit. Binding of the NS1 protein to the 30 kDa protein in vitro prevents CPSF binding to the RNA substrate and inhibits 3' end cleavage and polyadenylation of host pre-mRNAs. Thus the NS1 protein selectively inhibits the nuclear export of cellular, and not viral, mRNAs. Multiple alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]

CPSF4 基因产物(5)

mRNA Protein Name
NM_001081559.3 NP_001075028.1 cleavage and polyadenylation specificity factor subunit 4 isoform 2
NM_001318160.2 NP_001305089.1 cleavage and polyadenylation specificity factor subunit 4 isoform 3
NM_001318161.2 NP_001305090.1 cleavage and polyadenylation specificity factor subunit 4 isoform 4
NM_001318162.2 NP_001305091.1 cleavage and polyadenylation specificity factor subunit 4 isoform 5
NM_006693.4 NP_006684.1 cleavage and polyadenylation specificity factor subunit 4 isoform 1
基因本体论
  • 分子功能
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
16189514 GOA
enables sequence-specific double-stranded DNA binding IDA
IDA: 通过直接分析推断
28473536 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of mRNA cleavage and polyadenylation specificity factor complex IDA
IDA: 通过直接分析推断
21102410 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

CPSF4 蛋白结构

zf-CCCH

zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (64 - 86)

zf-CCCH

zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar) (144 - 168)

zf-CCHC

zf-CCHC: Zinc knuckle (244 - 260)

  • 0
  • 100
  • 200
  • 269 a.a.
蛋白主名 其他名称

cleavage and polyadenylation specificity factor subunit 4

CPSF 30 kDa subunit

CPSF4 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra CPSF4 O95639 FIP1L1 Homo sapiens Q6UN15
Anti Tag CoIP
33961781
Intra CPSF4 O95639 FIP1L1 Homo sapiens Q6UN15
Y2H Pooling
16189514
Intra CPSF4 O95639 MEOX2 Homo sapiens P50222
Validated Y2H
25416956
Intra CPSF4 O95639 MEOX2 Homo sapiens P50222
Y2H Array
25416956
Intra CPSF4 O95639 CDC73 Homo sapiens Q6P1J9
Anti Bait CoIP
19136632
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Influenza

Flu

Influenza With Non-Respiratory Manifestation

Influenza With Other Manifestations

Influenza, Human

Influenza, Susceptibility To

Seasonal Influenza, Virus Identified

Median Neuropathy
Epidermolysis Bullosa Simplex 1a, Generalized Severe

Epidermolysis Bullosa Simplex, Dowling-Meara Type

Epidermolysis Bullosa Herpetiformis, Dowling-Meara Type

EBS1A

Ebsdm

Epidermolysis Bullosa Simplex Dowling-Meara Type

Epidermolysis Bullosa Simplex, Herpetiformis

Ebs-Dm

Epidermolysis Bullosa Simplex 1a, Dowling-Meara Type

Ebs-Gen Sev

Epidermolysis Bullosa Herpetiformis Dowling-Meara Type

Generalized Severe Epidermolysis Bullosa Simplex

Dowling-Meara Type Epidermolysis Bullosa Simplex

Autosomal Dominant Generalized Epidermolysis Bullosa Simplex, Severe Form

Autosomal Dominant Generalized Ebs, Severe Form

Epidermolysis Bullosa Simplex Herpetiformis

Dm-Ebs

Epidermolysis Bullosa Simplex, Generalized Severe

Epidermolysis Bullosa Herpetiformis, Dowling-Meara

Epidermolysis Bullosa Herpetiformis Dowling-Meara

Gestational Ovarian Choriocarcinoma
Corpus Luteum Cyst

Cystic Corpus Luteum

Luteal Cystic Ovary Disease

Lutein Cyst

Granulosa Lutein Cyst

Swine Influenza

Influenza Due To Influenza A Virus Subtype H1n1

Avian Influenza

Bird Flu

Influenza In Birds

Avian Flu

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Canis familiaris CPSF4 VGNC VGNC:39576
Bos taurus CPSF4 VGNC VGNC:27673
Macaca mulatta CPSF4 VGNC VGNC:71474
Rattus norvegicus CPSF4 RGD RGD:620440
Mus musculus CPSF4 MGD MGI:1861602
Felis catus CPSF4 VGNC VGNC:61142