1. Gene
  2. JMJD6 - jumonji domain containing 6, arginine demethylase and lysine hydroxylase Gene

JMJD6 - jumonji domain containing 6, arginine demethylase and lysine hydroxylase Gene

中文名称:含 Jumonji 结构域 6,精氨酸脱甲基酶和赖氨酸羟化酶

种属: Homo sapiens

同用名: PSR; PTDSR; PTDSR1

基因 ID: 23210 | 基因类型: protein coding

关于 JMJD6

Cytogenetic location: 17q25.1 Genomic coordinates (GRCh38): 17:76,712,836-76,726,606 (from NCBI)

This gene has 8 transcripts (splice variants), 209 orthologues and 2 paralogues. Ubiquitous expression in bone marrow (RPKM 17.6), heart (RPKM 4.9) and 24 other tissues.

功能概要

该基因编码具有 JmjC 结构域的核蛋白。预测含有 JmjC 结构域的蛋白质起蛋白质羟化酶或组蛋白去甲基化酶的作用。该蛋白首先被鉴定为参与凋亡细胞吞噬作用的假定磷脂酰丝氨酸受体;然而,随后的研究表明它并不直接在凋亡细胞的清除中发挥作用,并质疑它是否是真正的磷脂酰丝氨酸受体。已发现该基因编码不同异构体的多个转录变体。[RefSeq 提供,2008 年 7 月]

This gene encodes a nuclear protein with a JmjC domain. JmjC domain-containing proteins are predicted to function as protein hydroxylases or histone demethylases. This protein was first identified as a putative phosphatidylserine receptor involved in phagocytosis of apoptotic cells; however, subsequent studies have indicated that it does not directly function in the clearance of apoptotic cells, and questioned whether it is a true phosphatidylserine receptor. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

JMJD6 基因产物(2)

mRNA Protein Name
NM_001081461.2 NP_001074930.1 bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform 1
NM_015167.3 NP_055982.2 bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 isoform 2
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables P-TEFb complex binding IDA
IDA: 通过直接分析推断
24360279 GOA
enables histone H3R2 demethylase activity IDA
IDA: 通过直接分析推断
17947579 GOA
enables histone H4R3 demethylase activity IDA
IDA: 通过直接分析推断
17947579 GOA
enables histone demethylase activity IDA
IDA: 通过直接分析推断
24498420 GOA
enables identical protein binding IDA
IDA: 通过直接分析推断
17534701 GOA
enables identical protein binding IPI
IPI: 通过物理相互作用推断
24360279 GOA
enables iron ion binding IDA
IDA: 通过直接分析推断
20679243 GOA
enables oxidative RNA demethylase activity IMP
IMP: 通过突变表型推断
24360279 GOA
enables peptidyl-lysine 5-dioxygenase activity EXP
EXP: 通过实验结果推断
23303181 GOA
enables peptidyl-lysine 5-dioxygenase activity IDA
IDA: 通过直接分析推断
19574390 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
19574390 GOA
enables protein demethylase activity IDA
IDA: 通过直接分析推断
24498420 GOA
enables single-stranded RNA binding IDA
IDA: 通过直接分析推断
20679243 GOA
enables transcription regulator activator activity IMP
IMP: 通过突变表型推断
21555454 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in chromatin remodeling IDA
IDA: 通过直接分析推断
17947579 GOA
involved in oxidative RNA demethylation IDA
IDA: 通过直接分析推断
24360279 GOA
involved in peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine IDA
IDA: 通过直接分析推断
19574390 GOA
involved in positive regulation of DNA-templated transcription IMP
IMP: 通过突变表型推断
21555454 GOA
involved in positive regulation of transcription by RNA polymerase II IDA
IDA: 通过直接分析推断
24360279 GOA
involved in protein homooligomerization IDA
IDA: 通过直接分析推断
22189873 GOA
involved in regulation of mRNA splicing, via spliceosome IMP
IMP: 通过突变表型推断
19574390 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in cytoplasm IDA
IDA: 通过直接分析推断
24498420 GOA
located in nucleolus IDA
IDA: 通过直接分析推断
21060799 GOA
located in nucleoplasm IDA
IDA: 通过直接分析推断
21060799 GOA
located in nucleus IDA
IDA: 通过直接分析推断
14729065 GOA
located in nucleus IMP
IMP: 通过突变表型推断
21555454 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

JMJD6 蛋白结构

JmjC

JmjC: JmjC domain, hydroxylase (174 - 288)

  • 0
  • 100
  • 200
  • 300
  • 403 a.a.
蛋白主名 其他名称

bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

arginine demethylase and lysine hydroxylase

JMJD6 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
JMJD6 Q6NYC1 NAA50 Homo sapiens Q9GZZ1
Validated Y2H
32296183
种属内
JMJD6 Q6NYC1 NAA50 Homo sapiens Q9GZZ1
Y2H Array
25416956
种属内
JMJD6 Q6NYC1 NAA50 Homo sapiens Q9GZZ1
Y2H Prey Pooling
25416956
种属内
JMJD6 Q6NYC1 CDK9 Homo sapiens P50750
Anti Tag CoIP
24360279
种属内
JMJD6 Q6NYC1 CARM1 Homo sapiens Q86X55
Anti Tag CoIP
24498420
种属内
JMJD6 Q6NYC1 ARGLU1 Homo sapiens Q9NWB6
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 CCNL1 Homo sapiens Q9UK58
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 TP53 Homo sapiens P04637
Anti Tag CoIP
24667498
种属内
JMJD6 Q6NYC1 TP53 Homo sapiens P04637
Pull Down
24667498
种属内
JMJD6 Q6NYC1 TP53 Homo sapiens P04637
Hydroxylase Assay
24667498
种属内
JMJD6 Q6NYC1 TP53 Homo sapiens P04637
Anti Bait CoIP
24667498
种属内
JMJD6 Q6NYC1 U2AF1 Homo sapiens Q01081
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 RSRC1 Homo sapiens Q96IZ7
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 RSRC1 Homo sapiens Q96IZ7
Y2H
23455924
种属内
JMJD6 Q6NYC1 PRPF38A Homo sapiens Q8NAV1
Y2H
23455924
种属内
JMJD6 Q6NYC1 PRPF38A Homo sapiens Q8NAV1
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 BRD4 Homo sapiens O60885
Anti Bait CoIP
24360279
种属内
JMJD6 Q6NYC1 BRD4 Homo sapiens O60885
Anti Tag CoIP
24360279
种属内
JMJD6 Q6NYC1 BRD4 Homo sapiens O60885
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 BRD4 Homo sapiens O60885
Pull Down
24360279
种属内
JMJD6 Q6NYC1 ZCCHC17 Homo sapiens Q9NP64
Y2H
23455924
种属内
JMJD6 Q6NYC1 ZCCHC17 Homo sapiens Q9NP64
Anti Tag CoIP
33961781
种属内
JMJD6 Q6NYC1 ESR1 Homo sapiens P03372
Anti Bait CoIP
24498420
种属内
JMJD6 Q6NYC1 ESR1 Homo sapiens P03372
Demethylase Assay
24498420
种属内
JMJD6 Q6NYC1 ESR1 Homo sapiens P03372
Pull Down
24498420
种属内
JMJD6 Q6NYC1 ESR1 Homo sapiens P03372
PLA
24498420
种属间: 跨种属相互作用 种属内: 同种属相互作用

JMJD6 抗体

目录号 产品名 应用 反应物种
HY-P81319 JMJD6 Antibody (YA1064) WB, ICC/IF Human

关联疾病

疾病名称 别名
Myasthenic Syndrome, Congenital, 9, Associated With Acetylcholine Receptor Deficiency

Congenital Myasthenic Syndrome 9

CMS9

Congenital Myasthenic Syndrome 9, Associated With Acetylcholine Receptor Deficiency

Myasthenic Syndrome, Congenital, Type 9, Associated With Acetylcholine Receptor Deficiency

Pancreatitis

Mumps Pancreatitis

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Macaca mulatta JMJD6 VGNC VGNC:73862
Canis familiaris JMJD6 VGNC VGNC:42189
Bos taurus JMJD6 VGNC VGNC:30377
Rattus norvegicus JMJD6 RGD RGD:1305395
Mus musculus JMJD6 MGD MGI:1858910
Others JMJD6 NCBI