1. Gene
  2. LHX6 - LIM homeobox 6 Gene

LHX6 - LIM homeobox 6 Gene

中文名称:LIM 同源框 6

种属: Homo sapiens

同用名: hLHX6; LHX6.1

基因 ID: 26468 | 基因类型: protein coding

关于 LHX6

Cytogenetic location: 9q33.2 Genomic coordinates (GRCh38): 9:122,202,582-122,228,957 (from NCBI)

This gene has 12 transcripts (splice variants), 265 orthologues and 20 paralogues. Broad expression in fat (RPKM 1.9), brain (RPKM 1.8) and 20 other tissues.

功能概要

该基因编码一个包含 LIM 结构域的大型蛋白质家族成员,LIM 结构域是一个独特的富含半胱氨酸的锌结合结构域。编码的蛋白质具有串联 LIM 结构域以及 DNA 结合同源结构域。该蛋白质作为参与胚胎发生和头部发育的转录因子发挥作用,并在神经嵴衍生的间充质细胞中高度表达。可变剪接导致编码不同异构体的多个转录变体。[RefSeq 提供,2017 年 1 月]

This gene encodes a member of a large protein family that contains the LIM domain, a unique cysteine-rich zinc-binding domain. The encoded protein has tandem LIM domains as well as a DNA-binding homeodomain. The protein functions as a transcription factor involved in embryogenesis and head development and is highly expressed in neural crest derived mesenchyme cells. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jan 2017]

LHX6 基因产物(6)

mRNA Protein Name
NM_001242333.2 NP_001229262.1 LIM/homeobox protein Lhx6 isoform 3
NM_001242334.2 NP_001229263.1 LIM/homeobox protein Lhx6 isoform 4
NM_001242335.2 NP_001229264.1 LIM/homeobox protein Lhx6 isoform 5
NM_001348190.2 NP_001335119.1 LIM/homeobox protein Lhx6 isoform 6
NM_014368.5 NP_055183.2 LIM/homeobox protein Lhx6 isoform 1
NM_199160.4 NP_954629.2 LIM/homeobox protein Lhx6 isoform 2
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
25416956 GOA
enables sequence-specific double-stranded DNA binding IDA
IDA: 通过直接分析推断
28473536 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

LHX6 蛋白结构

LIM

LIM: LIM domain (70 - 127)

LIM

LIM: LIM domain (131 - 185)

Homeobox

Homeobox: Homeobox domain (220 - 276)

  • 0
  • 100
  • 200
  • 300
  • 363 a.a.
蛋白主名 其他名称

LIM/homeobox protein Lhx6

LIM homeodomain protein 6.1

LHX6 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra LHX6 Q9UPM6 HSPB1 Homo sapiens P04792
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 HSPB1 Homo sapiens P04792
Validated Y2H
32814053
Intra LHX6 Q9UPM6 HSPB1 Homo sapiens P04792
Y2H Array
32814053
Intra LHX6 Q9UPM6 RNF11 Homo sapiens Q9Y3C5
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 RNF11 Homo sapiens Q9Y3C5
Validated Y2H
32814053
Intra LHX6 Q9UPM6 RNF11 Homo sapiens Q9Y3C5
Y2H Array
32814053
Intra LHX6 Q9UPM6 PMP22 Homo sapiens A0A6Q8PF08
Validated Y2H
32814053
Intra LHX6 Q9UPM6 PMP22 Homo sapiens A0A6Q8PF08
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 PMP22 Homo sapiens A0A6Q8PF08
Y2H Array
32814053
Intra LHX6 Q9UPM6 A2M Homo sapiens P01023
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 A2M Homo sapiens P01023
Y2H Array
32814053
Intra LHX6 Q9UPM6 A2M Homo sapiens P01023
Validated Y2H
32814053
Intra LHX6 Q9UPM6 LDB1 Homo sapiens Q86U70
BioID
35140242
Intra LHX6 Q9UPM6 LDB1 Homo sapiens Q86U70
Affinity Chrom
35140242
Intra LHX6 Q9UPM6 LDB1 Homo sapiens Q86U70
Validated Y2H
25416956
Intra LHX6 Q9UPM6 LDB1 Homo sapiens Q86U70
Y2H Array
25416956
Intra LHX6 Q9UPM6 LDB1 Homo sapiens Q86U70
Anti Tag CoIP
33961781
Intra LHX6 Q9UPM6 WFS1 Homo sapiens O76024
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 WFS1 Homo sapiens O76024
Validated Y2H
32814053
Intra LHX6 Q9UPM6 WFS1 Homo sapiens O76024
Y2H Array
32814053
Intra LHX6 Q9UPM6 PHYH Homo sapiens O14832
Y2H Pooling
32814053
Intra LHX6 Q9UPM6 PHYH Homo sapiens O14832
Validated Y2H
32814053
Intra LHX6 Q9UPM6 PHYH Homo sapiens O14832
Y2H Array
32814053
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Geotrichosis
Retinitis Pigmentosa 58

RP58

Retinitis Pigmentosa, Type 58

Cleft Palate, Isolated

Cleft Palate

Isolated Cleft Palate

CPI

Cp

Palatoschisis

Cleft Palate Isolated

Uranostaphyloschisis

Congenital Fissure Of Palate

Cleft Of Secondary Palate

Stuttering

Stammering

Familial Persistent Stuttering

Stuttering, Familial Persistent 1

Tooth Agenesis

Oligodontia

Hypodontia

Selective Tooth Agenesis

Tooth Agenesis, Selective

Familial Tooth Agenesis

Anodontia

Congenital Absence Of One Tooth

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Mus musculus LHX6 MGD MGI:1306803
Bos taurus LHX6 VGNC VGNC:30876
Macaca mulatta LHX6 VGNC VGNC:74100
Canis familiaris LHX6 VGNC VGNC:42667
Felis catus LHX6 VGNC VGNC:63224
Rattus norvegicus LHX6 RGD RGD:1306174