1. Gene
  2. PCDHA4 - protocadherin alpha 4 Gene

PCDHA4 - protocadherin alpha 4 Gene

中文名称:原钙粘蛋白α 4

种属: Homo sapiens

同用名: CNR1; CNRN1; CRNR1; PCDH-ALPHA4

基因 ID: 56144 | 基因类型: protein coding

关于 PCDHA4

Cytogenetic location: 5q31.3 Genomic coordinates (GRCh38): 5:140,807,068-141,012,347 (from NCBI)

This gene has 5 transcripts (splice variants), 31 orthologues and 61 paralogues.

功能概要

该基因是原钙粘蛋白 alpha 基因簇的成员,原钙粘蛋白 alpha 基因簇是串联连接在 5 号染色体上的三个相关基因簇之一,显示出与 B 细胞和 T 细胞受体基因簇相似的不寻常的基因组组织。 α基因簇由 15 个与小鼠 CNR 基因相关的钙粘蛋白超家族基因组成,由 13 个高度相似和 2 个更远相关的编码序列组成。 15 个 N 末端外显子或可变外显子的串联阵列之后是下游 C 末端外显子或恒定外显子,它们由簇中的所有基因共享。大的、不间断的 N 端外显子各自编码六个钙粘蛋白胞外域,而 C 端外显子编码细胞质结构域。这些神经钙粘蛋白样细胞粘附蛋白是完整的质膜蛋白,很可能在大脑中特定细胞-细胞连接的建立和功能中发挥关键作用。已观察到选择性剪接并提出了其他变体,但它们的全长性质尚未确定。[RefSeq 提供,2008 年 7 月]

This gene is a member of the protocadherin alpha gene cluster, one of three related gene clusters tandemly linked on chromosome five that demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The alpha gene cluster is composed of 15 cadherin superfamily genes related to the mouse CNR genes and consists of 13 highly similar and 2 more distantly related coding sequences. The tandem array of 15 N-terminal exons, or variable exons, are followed by downstream C-terminal exons, or constant exons, which are shared by all genes in the cluster. The large, uninterrupted N-terminal exons each encode six cadherin ectodomains while the C-terminal exons encode the cytoplasmic domain. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins that most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been observed and additional variants have been suggested but their full-length nature has yet to be determined. [provided by RefSeq, Jul 2008]

PCDHA4 基因产物(2)

mRNA Protein Name
NM_018907.4 NP_061730.1 protocadherin alpha-4 isoform 1 precursor
NM_031500.3 NP_113688.1 protocadherin alpha-4 isoform 2 precursor
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables protein binding IPI
IPI: 通过物理相互作用推断
25416956 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PCDHA4 蛋白结构

Cadherin_2

Cadherin_2: Cadherin-like (29 - 111)

Cadherin

Cadherin: Cadherin domain (140 - 233)

Cadherin

Cadherin: Cadherin domain (247 - 341)

Cadherin

Cadherin: Cadherin domain (358 - 445)

Cadherin

Cadherin: Cadherin domain (460 - 556)

Cadherin

Cadherin: Cadherin domain (587 - 669)

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  • 947 a.a.
蛋白主名 其他名称

protocadherin alpha-4

KIAA0345-like 10

PCDHA4 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PCDHA4 Q9UN74 SGTA Homo sapiens O43765 25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus PCDHA4 RGD RGD:620337