1. Gene
  2. A1CF - APOBEC1 complementation factor Gene

A1CF - APOBEC1 complementation factor Gene

中文名称:APOBEC1 互补因子

种属: Homo sapiens

同用名: ACF; ASP; ACF64; ACF65; APOBEC1CF

基因 ID: 29974 | 基因类型: protein coding

关于 A1CF

Cytogenetic location: 10q11.23 Genomic coordinates (GRCh38): 10:50,799,409-50,885,627 (from NCBI)

This gene has 10 transcripts (splice variants), 202 orthologues, 36 paralogues and is associated with 64 phenotypes. Biased expression in liver (RPKM 31.2), small intestine (RPKM 8.6) and 4 other tissues.

功能概要

哺乳动物载脂蛋白 B mRNA 经历位点特异性 C 到 U 脱氨作用,这是由多组分酶复合物介导的,该酶复合物含有由 APOBEC-1 组成的最小核心和由该基因编码的互补因子。该基因产物具有三个不同的 RNA 识别基序,属于 RNA 结合蛋白的 hnRNP R 家族。有人提出,这种互补因子作为 RNA 结合亚基发挥作用,并停靠 APOBEC-1 使上游胞苷脱氨。研究表明该蛋白质还可能参与其他 RNA 编辑或 RNA 加工事件。已发现该基因的几种转录变体编码几种不同的亚型。[RefSeq 提供,2010 年 11 月]

Mammalian apolipoprotein B mRNA undergoes site-specific C to U deamination, which is mediated by a multi-component Enzyme complex containing a minimal core composed of APOBEC-1 and a complementation factor encoded by this gene. The gene product has three non-identical RNA recognition motifs and belongs to the hnRNP R family of RNA-binding proteins. It has been proposed that this complementation factor functions as an RNA-binding subunit and docks APOBEC-1 to deaminate the upstream cytidine. Studies suggest that the protein may also be involved in other RNA editing or RNA processing events. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]

A1CF 基因产物(8)

mRNA Protein Name
NM_001198818.2 NP_001185747.1 APOBEC1 complementation factor isoform 1
NM_001198819.2 NP_001185748.1 APOBEC1 complementation factor isoform 4
NM_001198820.2 NP_001185749.1 APOBEC1 complementation factor isoform 3
NM_001370130.1 NP_001357059.1 APOBEC1 complementation factor isoform 1
NM_001370131.1 NP_001357060.1 APOBEC1 complementation factor isoform 2
NM_014576.4 NP_055391.2 APOBEC1 complementation factor isoform 1
NM_138932.3 NP_620310.1 APOBEC1 complementation factor isoform 2
NM_138933.3 NP_620311.1 APOBEC1 complementation factor isoform 3
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
NOT enables double-stranded RNA binding IDA
IDA: 通过直接分析推断
11871661 GOA
enables enzyme-substrate adaptor activity IDA
IDA: 通过直接分析推断
11871661 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
10669759 GOA
enables single-stranded RNA binding IDA
IDA: 通过直接分析推断
11871661 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in cytidine to uridine editing IDA
IDA: 通过直接分析推断
24916387 GOA
involved in mRNA modification IDA
IDA: 通过直接分析推断
11134005 GOA
involved in negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IDA
IDA: 通过直接分析推断
12881431 GOA
involved in protein stabilization IDA
IDA: 通过直接分析推断
12881431 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of apolipoprotein B mRNA editing enzyme complex IDA
IDA: 通过直接分析推断
10781591 GOA
located in cytoplasm IDA
IDA: 通过直接分析推断
12881431 GOA
located in nucleus IDA
IDA: 通过直接分析推断
12881431 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

A1CF 蛋白结构

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (58 - 124)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (138 - 199)

(233 - 297)

DND1_DSRM

DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1 (447 - 523)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 500
  • 594 a.a.
蛋白主名 其他名称

APOBEC1 complementation factor

APOBEC-1 stimulating protein

A1CF 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra A1CF Q9NQ94 RIMBP3 Homo sapiens Q9UFD9
Y2H Array
32296183
Intra A1CF Q9NQ94 RIMBP3 Homo sapiens Q9UFD9
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 RIMBP3 Homo sapiens Q9UFD9
Validated Y2H
32296183
Intra A1CF Q9NQ94 SPMIP6 Homo sapiens Q8NCR6
Y2H Array
32296183
Intra A1CF Q9NQ94 SPMIP6 Homo sapiens Q8NCR6
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 KRT34 Homo sapiens O76011
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 KRT34 Homo sapiens O76011
Y2H Array
32296183
Intra A1CF Q9NQ94 DOK3 Homo sapiens Q7L591-3
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 DOK3 Homo sapiens Q7L591-3
Y2H Array
32296183
Intra A1CF Q9NQ94 ACTMAP Homo sapiens Q5BKX5-3
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 ACTMAP Homo sapiens Q5BKX5-3
Y2H Array
32296183
Intra A1CF Q9NQ94 EIF4G1 Homo sapiens Q04637-9
Y2H Array
32296183
Intra A1CF Q9NQ94 EIF4G1 Homo sapiens Q04637-9
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 POGZ Homo sapiens Q7Z3K3
Y2H Array
32296183
Intra A1CF Q9NQ94 POGZ Homo sapiens Q7Z3K3
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 REL Homo sapiens Q04864
Y2H Prey Pooling
25416956
Intra A1CF Q9NQ94 REL Homo sapiens Q04864
Validated Y2H
25416956
Intra A1CF Q9NQ94 REL Homo sapiens Q04864
Y2H Array
25416956
Intra A1CF Q9NQ94 TRAF1 Homo sapiens Q13077
Validated Y2H
25416956
Intra A1CF Q9NQ94 TRAF1 Homo sapiens Q13077
Y2H Array
25416956
Intra A1CF Q9NQ94 TRAF1 Homo sapiens Q13077
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 TRAF1 Homo sapiens Q13077
Y2H Array
32296183
Intra A1CF Q9NQ94 TRAF1 Homo sapiens Q13077
Y2H Prey Pooling
25416956
Intra A1CF Q9NQ94 CYSRT1 Homo sapiens A8MQ03
Y2H Array
32296183
Intra A1CF Q9NQ94 CYSRT1 Homo sapiens A8MQ03
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 OIP5 Homo sapiens O43482
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 OIP5 Homo sapiens O43482
Y2H Array
32296183
Intra A1CF Q9NQ94 FHL2 Homo sapiens Q14192
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 FHL2 Homo sapiens Q14192
Y2H Array
32296183
Intra A1CF Q9NQ94 HSPB2 Homo sapiens Q16082
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 HSPB2 Homo sapiens Q16082
Y2H Array
32296183
Intra A1CF Q9NQ94 FHL3 Homo sapiens Q13643
Y2H Prey Pooling
25416956
Intra A1CF Q9NQ94 METTL27 Homo sapiens Q8N6F8
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 METTL27 Homo sapiens Q8N6F8
Y2H Array
32296183
Intra A1CF Q9NQ94 KLHDC7B Homo sapiens Q96G42
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 KLHDC7B Homo sapiens Q96G42
Y2H Array
32296183
Intra A1CF Q9NQ94 ECM1 Homo sapiens Q16610
Y2H Array
32296183
Intra A1CF Q9NQ94 ECM1 Homo sapiens Q16610
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 KRT31 Homo sapiens Q15323
Y2H Array
32296183
Intra A1CF Q9NQ94 KRT31 Homo sapiens Q15323
Y2H Prey Pooling
32296183
Intra A1CF Q9NQ94 PLEKHG4 Homo sapiens Q58EX7
Y2H Array
32296183
Intra A1CF Q9NQ94 PLEKHG4 Homo sapiens Q58EX7
Y2H Prey Pooling
32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Phosphoribosylpyrophosphate Synthetase Superactivity

PRPS1 SUPERACTIVITY

Prpp Synthetase Superactivity

Gout, Prps-Related

Prpp Synthetase Deficiency

Prpp Synthetase Overactivity

Prs Overactivity

Prs Superactivity

Mild Phosphoribosylpyrophosphate Synthetase Superactivity

Mild Prpp Synthetase Superactivity

Mild Prps1 Superactivity

Severe Phosphoribosylpyrophosphate Synthetase Superactivity

Severe Prpp Synthetase Superactivity

Severe Prps1 Superactivity

Prps-Related Gout

Superactivity, Phosphoribosylpyrophosphate Synthetase

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Felis catus A1CF VGNC VGNC:59445
Rattus norvegicus A1CF RGD RGD:619834
Canis familiaris A1CF VGNC VGNC:37399
Bos taurus A1CF VGNC VGNC:25434
Mus musculus A1CF MGD MGI:1917115
Macaca mulatta A1CF VGNC VGNC:69523