1. Gene
  2. HNRNPD - heterogeneous nuclear ribonucleoprotein D Gene

HNRNPD - heterogeneous nuclear ribonucleoprotein D Gene

中文名称:异质性核糖核蛋白 D

种属: Homo sapiens

同用名: P37; AUF1; AUF1A; HNRPD; hnRNPD0

基因 ID: 3184 | 基因类型: protein coding

关于 HNRNPD

Cytogenetic location: 4q21.22 Genomic coordinates (GRCh38): 4:82,352,498-82,373,991 (from NCBI)

This gene has 18 transcripts (splice variants), 198 orthologues, 36 paralogues and is associated with 1 phenotype. Ubiquitous expression in lymph node (RPKM 80.4), bone marrow (RPKM 72.5) and 25 other tissues.

功能概要

该基因属于普遍表达的异质核核糖核蛋白 (hnRNP) 亚家族。 hnRNPs 是核酸结合蛋白,它们与异质核 RNA (hnRNA) 复合。这些蛋白质与细胞核中的前体 mRNA 相关,并且似乎影响前体 mRNA 加工以及 mRNA 代谢和运输的其他方面。虽然所有的 hnRNP 都存在于细胞核中,但有些似乎在细胞核和细胞质之间穿梭。 hnRNP 蛋白具有独特的核酸结合特性。由该基因编码的蛋白质具有两个重复的与 RNA 结合的准 RRM 结构域。它定位于细胞核和细胞质。该蛋白质与 mRNA 稳定性的调节有关。该基因的可变剪接导致四种转录本变体。[RefSeq 提供,2008 年 7 月]

This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are nucleic acid binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and Other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene has two repeats of quasi-RRM domains that bind to RNAs. It localizes to both the nucleus and the cytoplasm. This protein is implicated in the regulation of mRNA stability. Alternative splicing of this gene results in four transcript variants. [provided by RefSeq, Jul 2008]

HNRNPD 基因产物(4)

mRNA Protein Name
NM_001003810.2 NP_001003810.1 heterogeneous nuclear ribonucleoprotein D0 isoform d
NM_002138.4 NP_002129.2 heterogeneous nuclear ribonucleoprotein D0 isoform c
NM_031369.3 NP_112737.1 heterogeneous nuclear ribonucleoprotein D0 isoform b
NM_031370.3 NP_112738.1 heterogeneous nuclear ribonucleoprotein D0 isoform a
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables RNA binding IDA
IDA: 通过直接分析推断
8321232 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
12107167 GOA
enables telomeric DNA binding IDA
IDA: 通过直接分析推断
8321232 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in CRD-mediated mRNA stabilization IDA
IDA: 通过直接分析推断
11051545 GOA
involved in circadian regulation of translation IMP
IMP: 通过突变表型推断
24423872 GOA
involved in negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IDA
IDA: 通过直接分析推断
11051545 GOA
involved in positive regulation of cytoplasmic translation IDA
IDA: 通过直接分析推断
11051545 GOA
involved in positive regulation of translation IMP
IMP: 通过突变表型推断
24423872 GOA
involved in regulation of circadian rhythm IMP
IMP: 通过突变表型推断
24423872 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in cytosol IDA
IDA: 通过直接分析推断
11051545 GOA
part of mCRD-mediated mRNA stability complex IPI
IPI: 通过物理相互作用推断
11051545 GOA
part of ribonucleoprotein complex IDA
IDA: 通过直接分析推断
17289661 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

HNRNPD 蛋白结构

CBFNT

CBFNT: CBFNT (NUC161) domain (1 - 79)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (100 - 167)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (184 - 243)

  • 0
  • 100
  • 200
  • 300
  • 355 a.a.
蛋白主名 其他名称

heterogeneous nuclear ribonucleoprotein D0

ARE-binding protein AUFI, type A

HNRNPD 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra HNRNPD Q14103 LDHAL6B Homo sapiens Q9BYZ2
Density Sedimentation
12107167
Intra HNRNPD Q14103 ING4 Homo sapiens Q9UNL4
Anti Bait CoIP
23603392
Intra HNRNPD Q14103 HNRNPA2B1 Homo sapiens P22626
Crosslink
30021884
Intra HNRNPD Q14103 HNRNPA2B1 Homo sapiens P22626
Anti Tag CoIP
26496610
Intra HNRNPD Q14103 HNRNPA2B1 Homo sapiens P22626
Anti Tag CoIP
35271311
Intra HNRNPD Q14103 HNRNPDL Homo sapiens O14979
Anti Tag CoIP
35271311
Intra HNRNPD Q14103 HNRNPU Homo sapiens Q00839
Anti Tag CoIP
26496610
Intra HNRNPD Q14103 HNRNPU Homo sapiens Q00839
Anti Tag CoIP
35271311
Intra HNRNPD Q14103 HNRNPC Homo sapiens P07910
Anti Tag CoIP
35271311
Intra HNRNPD Q14103 HNRNPC Homo sapiens P07910
Y2H
22365833
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Ulcerative Blepharitis
Chromosome 4q21 Deletion Syndrome

4q21 Microdeletion Syndrome

Monosomy 4q21

Del(4)(Q21)

Chromosome Deletion Syndrome 4q21

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Canis familiaris HNRNPD VGNC VGNC:54954
Bos taurus HNRNPD VGNC VGNC:52786
Mus musculus HNRNPD MGD MGI:101947
Felis catus HNRNPD VGNC VGNC:67606
Rattus norvegicus HNRNPD RGD RGD:620365
Macaca mulatta HNRNPD VGNC VGNC:106590