1. Gene
  2. SNRPB - small nuclear ribonucleoprotein polypeptides B and B1 Gene

SNRPB - small nuclear ribonucleoprotein polypeptides B and B1 Gene

中文名称:小核核糖核蛋白多肽 B 和 B1

种属: Homo sapiens

同用名: COD; CCMS; SNRPB1; SmB/B'; Sm-B/B'; snRNP-B; SmB/SmB'

基因 ID: 6628 | 基因类型: protein coding

关于 SNRPB

Cytogenetic location: 20p13 Genomic coordinates (GRCh38): 20:2,461,642-2,470,789 (from NCBI)

This gene has 10 transcripts (splice variants), 228 orthologues, 1 paralogue and is associated with 3 phenotypes. Ubiquitous expression in bone marrow (RPKM 101.8), lymph node (RPKM 67.1) and 25 other tissues.

功能概要

由该基因编码的蛋白质是在 U1、U2、U4/U6 和 U5 小核糖核蛋白颗粒 (snRNP) 中常见的几种核蛋白之一。这些 snRNPs 参与前体 mRNA 剪接,编码的蛋白质也可能在前体 mRNA 剪接或 snRNP 结构中发挥作用。来自系统性红斑狼疮患者的自身抗体经常识别编码蛋白上的表位。已发现该基因的两个转录变体编码不同的亚型 (B 和 B') 。[RefSeq 提供,2008 年 7 月]

The protein encoded by this gene is one of several nuclear proteins that are found in common among U1, U2, U4/U6, and U5 small ribonucleoprotein particles (snRNPs). These snRNPs are involved in pre-mRNA splicing, and the encoded protein may also play a role in pre-mRNA splicing or snRNP structure. Autoantibodies from patients with systemic lupus erythematosus frequently recognize epitopes on the encoded protein. Two transcript variants encoding different isoforms (B and B') have been found for this gene. [provided by RefSeq, Jul 2008]

SNRPB 基因产物(2)

mRNA Protein Name
NM_003091.4 NP_003082.1 small nuclear ribonucleoprotein-associated proteins B and B' isoform B
NM_198216.2 NP_937859.1 small nuclear ribonucleoprotein-associated proteins B and B' isoform B'
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables RNA binding IPI
IPI: 通过物理相互作用推断
18082603 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
8076607 GOA
enables telomerase RNA binding IPI
IPI: 通过物理相互作用推断
18082603 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in mRNA splicing, via spliceosome IDA
IDA: 通过直接分析推断
28076346 GOA
acts upstream of or within protein methylation IDA
IDA: 通过直接分析推断
18495660 GOA
involved in spliceosomal snRNP assembly IDA
IDA: 通过直接分析推断
18984161 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of SMN-Sm protein complex IDA
IDA: 通过直接分析推断
18984161 GOA
part of U1 snRNP IDA
IDA: 通过直接分析推断
21113136 GOA
part of U1 snRNP IPI
IPI: 通过物理相互作用推断
33677607 GOA
part of U12-type spliceosomal complex IDA
IDA: 通过直接分析推断
15146077 GOA
part of U2-type catalytic step 2 spliceosome IDA
IDA: 通过直接分析推断
28076346 GOA
part of U2-type precatalytic spliceosome IDA
IDA: 通过直接分析推断
28781166 GOA
part of U2-type spliceosomal complex IDA
IDA: 通过直接分析推断
32494006 GOA
part of U4 snRNP IDA
IDA: 通过直接分析推断
21516107 GOA
part of U4/U6 x U5 tri-snRNP complex IDA
IDA: 通过直接分析推断
26912367 GOA
part of U4/U6 x U5 tri-snRNP complex IPI
IPI: 通过物理相互作用推断
30975767 GOA
part of U7 snRNP IDA
IDA: 通过直接分析推断
11574479 GOA
part of catalytic step 2 spliceosome IDA
IDA: 通过直接分析推断
11991638 GOA
located in cytosol IDA
IDA: 通过直接分析推断
18984161 GOA
part of methylosome IDA
IDA: 通过直接分析推断
18984161 GOA
located in nucleus IDA
IDA: 通过直接分析推断
28076346 GOA
part of spliceosomal complex IPI
IPI: 通过物理相互作用推断
33677607 GOA
part of telomerase holoenzyme complex IDA
IDA: 通过直接分析推断
18082603 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

SNRPB 蛋白结构

LSM

LSM: LSM domain (9 - 81)

  • 0
  • 100
  • 200
  • 240 a.a.
蛋白主名 其他名称

small nuclear ribonucleoprotein-associated proteins B and B'

B polypeptide of Sm protein

SNRPB 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
SNRPB P14678 SF3A2 Homo sapiens Q15428
Anti Tag CoIP
35271311
种属内
SNRPB P14678 SF3A2 Homo sapiens Q15428
Anti Tag CoIP
33961781
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
Anti Bait CoIP
37248947
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
X-Ray Diffraction
19325628
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
Anti Tag CoIP
33961781
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
Ion Exchange Chrom
19325628
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
Anti Tag CoIP
35271311
种属内
SNRPB P14678 SNRPD3 Homo sapiens P62318
Comig Non-Denat Gel
18984161
种属内
SNRPB P14678 CLNS1A Homo sapiens P54105
Anti Tag CoIP
35271311
种属内
SNRPB P14678 CLNS1A Homo sapiens P54105
Anti Tag CoIP
33961781
种属内
SNRPB P14678 STRAP Homo sapiens Q9Y3F4
Anti Tag CoIP
35271311
种属内
SNRPB P14678 STRAP Homo sapiens Q9Y3F4
Pull Down
15848170
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Y2H
16000308
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
NMR
16000308
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Anti Tag CoIP
35271311
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Y2H Array
31515488
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Anti Tag CoIP
33961781
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Peptide Array
15105431
种属内
SNRPB P14678 CD2BP2 Homo sapiens O95400
Confocal
15105431
种属内
SNRPB P14678 ATXN1 Homo sapiens P54253
Validated Y2H
32814053
种属内
SNRPB P14678 ATXN1 Homo sapiens P54253
Y2H Array
32814053
种属内
SNRPB P14678 ATXN1 Homo sapiens P54253
Y2H Pooling
32814053
种属内
SNRPB P14678 COIL Homo sapiens P38432
Pull Down
21070772
种属内
SNRPB P14678 COIL Homo sapiens P38432
Anti Tag CoIP
35271311
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Cerebrocostomandibular Syndrome

Cerebro-Costo-Mandibular Syndrome

CCMS

Rib Gap Defects With Micrognathia

Ccm Syndrome

Rare Disease With Pierre Robin Syndrome
Pierre Robin Syndrome

Pierre Robin Sequence

Glossoptosis, Micrognathia, And Cleft Palate

Pierre Robin Syndrome Skeletal Dysplasia Polydactyly

Pierre-Robin Syndrome

Isolated Pierre Robin Sequence

Isolated Pierre-Robin Syndrome

PRBNS

Robin Sequence

Robin Syndrome

Isolated Pierre Robin Syndrome

Lupus Erythematosus

Lupus

Lupus Vulgaris

Lupus Erythematosus, Discoid

Lupus Erythematosus, Systemic

Subacute Cutaneous Lupus

Le - [Lupus Erythematosus]

Systemic Lupus Erythematosus

Lupus Nephritis

SLE

Disseminated Lupus Erythematosus

Systemic Lupus Erythematosus, Susceptibility To

Lupus Erythematosus, Systemic

Lupus Nephritis, Susceptibility To

Libman-Sacks Disease

Systemic Lupus Erythematosus Susceptibility To

Sle - Lupus Erythematosus, Systemic

Le Syndrome

Lupus

Lupus Erythematosus Systemic

Lupus Erythematosus, Systemic, Susceptibility To

Lupus Vulgaris

Lupus Erythematosus, Discoid

Lupus Erythematosus

Systemic Lupus Erythematosus Nos

Sle - [Systemic Lupus Erythematosus]

Burn-Mckeown Syndrome

Choanal Atresia-Hearing Loss-Cardiac Defects-Craniofacial Dysmorphism Syndrome

Oculootofacial Dysplasia

BMKS

Oofd

Bilateral Choanal Atresia, Cardiac Defects, Deafness, And Dysmorphic Appearance

Choanal Atresia - Deafness - Cardiac Defects - Dysmorphism Syndrome

Choanal Atresia Deafness Cardiac Defects Dysmorphism

Oculo-Oto-Facial Dysplasia

Mandibulofacial Dysostosis, Guion-Almeida Type

Mandibulofacial Dysostosis With Microcephaly

Mandibulofacial Dysostosis-Microcephaly Syndrome

MFDGA

MFDM

Mfdm Syndrome

Growth And Mental Retardation, Mandibulofacial Dysostosis, Microcephaly, And Cleft Palate

Growth Delay - Intellectual Disability - Mandibulofacial Dysostosis - Microcephaly - Cleft Palate

Growth Delay-Intellectual Disability-Mandibulofacial Dysostosis-Microcephaly-Cleft Palate Syndrome

Dysostosis, Mandibulofacial, Guion-Almeida Type

Acrofacial Dysostosis 1, Nager Type

Nager Syndrome

Nager Acrofacial Dysostosis

AFD1

Preaxial Acrofacial Dysostosis

Mandibulofacial Dysostosis, Treacher Collins Type, With Limb Anomalies

Afd, Nager Type

Nager Acrofacial Dysostosis Syndrome

Nafd

Acrofacial Dysostosis, Nager Type

Afd

Preaxial Manibulofacial Dysostosis

Split Hand Deformity-Mandibulofacial Dysostosis

Preaxial Mandibulofacial Dysostosis

Mandibulofacial Dysostosis With Preaxial Limb Anomalies

Preaxial Acrodysostosis

Afd Nager Type

Mandibulofacial Dysostosis Treacher Collins Type With Limb Anomalies

Spinal Muscular Atrophy

Sma

5q Sma

Proximal Sma

Sma-Associated Sma

Spinal Amyotrophies

Spinal Amyotrophy

Spinal Muscle Degeneration

Spinal Muscle Wasting

Muscular Atrophy Spinal

Atrophy, Muscular, Spinal

Hereditary Motor Neuronopathy

Progressive Muscular Atrophy

Sma - [Spinal Muscular Atrophy]

Muscular Atrophy

Muscle Wasting

Amyotrophia

Wasting - Muscle

Skeletal Muscle Atrophy

Microcephaly, Autosomal Dominant

Autosomal Dominant Microcephaly

Microcephaly Autosomal Dominant

Autosomal Dominant Primary Microcephaly

Microcephaly With Autosomal Dominant Inheritance

Acrofacial Dysostosis
疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Canis familiaris SNRPB VGNC VGNC:99671
Macaca mulatta SNRPB VGNC VGNC:77676
Bos taurus SNRPB VGNC VGNC:35076
Rattus norvegicus SNRPB RGD RGD:621301
Mus musculus SNRPB MGD MGI:98342