1. Gene
  2. RNF40 - ring finger protein 40 Gene

RNF40 - ring finger protein 40 Gene

中文名称:无名指蛋白 40

种属: Homo sapiens

同用名: BRE1B; RBP95; STARING

基因 ID: 9810 | 基因类型: protein coding

关于 RNF40

Cytogenetic location: 16p11.2 Genomic coordinates (GRCh38): 16:30,761,612-30,776,307 (from NCBI)

This gene has 12 transcripts (splice variants), 200 orthologues and 1 paralogue. Ubiquitous expression in testis (RPKM 21.6), bone marrow (RPKM 14.4) and 25 other tissues.

功能概要

由该基因编码的蛋白质包含一个无名指,这是一种已知参与蛋白质-蛋白质和蛋白质-DNA 相互作用的基序。据报道,该蛋白质与肿瘤抑制蛋白 RB1 相互作用。对大鼠对应物的研究表明,这种蛋白质可能作为 E3 泛素蛋白连接酶发挥作用,并促进突触融合蛋白 1 的泛素化和降解,突触融合蛋白 1 是神经递质释放机制的重要组成部分。已为该基因发现编码不同亚型的多个可变剪接转录物变体。[RefSeq 提供,2011 年 5 月]

The protein encoded by this gene contains a RING finger, a motif known to be involved in protein-protein and protein-DNA interactions. This protein was reported to interact with the tumor suppressor protein RB1. Studies of the rat counterpart suggested that this protein may function as an E3 ubiquitin-protein Ligase, and facilitate the ubiquitination and degradation of syntaxin 1, which is an essential component of the neurotransmitter release machinery. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]

RNF40 基因产物(4)

mRNA Protein Name
NM_001207033.1 NP_001193962.1 E3 ubiquitin-protein ligase BRE1B isoform 2
NM_001207034.1 NP_001193963.1 E3 ubiquitin-protein ligase BRE1B isoform 3
NM_001286572.3 NP_001273501.1 E3 ubiquitin-protein ligase BRE1B isoform 1
NM_014771.4 NP_055586.1 E3 ubiquitin-protein ligase BRE1B isoform 1
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables mRNA 3'-UTR binding IDA
IDA: 通过直接分析推断
19575011 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
10944455 GOA
enables protein homodimerization activity IPI
IPI: 通过物理相互作用推断
10944455 GOA
enables ubiquitin protein ligase binding IPI
IPI: 通过物理相互作用推断
16307923 GOA
contributes to ubiquitin-protein transferase activity IDA
IDA: 通过直接分析推断
16307923 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in positive regulation of transcription by RNA polymerase II IDA
IDA: 通过直接分析推断
16307923 GOA
NOT involved in regulation of mitotic cell cycle IMP
IMP: 通过突变表型推断
19575011 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of HULC complex IDA
IDA: 通过直接分析推断
19410543 GOA
located in nucleus IDA
IDA: 通过直接分析推断
10944455 GOA
part of ubiquitin ligase complex IDA
IDA: 通过直接分析推断
16307923 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

RNF40 蛋白结构

zf-C3HC4

zf-C3HC4: Zinc finger, C3HC4 type (RING finger) (948 - 986)

  • 0
  • 200
  • 400
  • 600
  • 800
  • 1001 a.a.
蛋白主名 其他名称

E3 ubiquitin-protein ligase BRE1B

95 kDa retinoblastoma protein binding protein

RNF40 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra RNF40 O75150 UBE2I Homo sapiens Q7KZS0
Y2H Array
32296183
Intra RNF40 O75150 UBE2I Homo sapiens Q7KZS0
Validated Y2H
25416956
Intra RNF40 O75150 UBE2I Homo sapiens Q7KZS0
Validated Y2H
32296183
Intra RNF40 O75150 UBE2I Homo sapiens Q7KZS0
Y2H Prey Pooling
32296183
Intra RNF40 O75150 AMOTL2 Homo sapiens Q9Y2J4-4
Validated Y2H
25416956
Intra RNF40 O75150 CCDC146 Homo sapiens Q8IYE0-2
Validated Y2H
25416956
Intra RNF40 O75150 CCDC146 Homo sapiens Q8IYE0-2
Y2H Array
25416956
Intra RNF40 O75150 DUSP29 Homo sapiens Q68J44
Validated Y2H
32296183
Intra RNF40 O75150 SFR1 Homo sapiens Q86XK3
Y2H Prey Pooling
25416956
Intra RNF40 O75150 DISC1 Homo sapiens Q9NRI5-2
Y2H Prey Pooling
32296183
Intra RNF40 O75150 DISC1 Homo sapiens Q9NRI5-2
Y2H Array
32296183
Intra RNF40 O75150 DISC1 Homo sapiens Q9NRI5-2
Validated Y2H
32296183
Intra RNF40 O75150 MEOX2 Homo sapiens Q6FHY5
Y2H Prey Pooling
26871637
Intra RNF40 O75150 MEOX2 Homo sapiens Q6FHY5
Validated Y2H
26871637
Intra RNF40 O75150 MEOX2 Homo sapiens Q6FHY5
Y2H Array
26871637
Intra RNF40 O75150 RNF20 Homo sapiens Q5VTR2
Anti Tag CoIP
35271311
Intra RNF40 O75150 RNF20 Homo sapiens Q5VTR2
Anti Tag CoIP
19410543
Intra RNF40 O75150 RNF20 Homo sapiens Q5VTR2
Anti Tag CoIP
33961781
Intra RNF40 O75150 NCBP1 Homo sapiens Q09161
Anti Tag CoIP
35271311
Intra RNF40 O75150 NCBP1 Homo sapiens Q09161
Validated Y2H
32296183
Intra RNF40 O75150 HTT Homo sapiens P42858
Y2H
17500595
Intra RNF40 O75150 HTT Homo sapiens P42858
Validated Y2H
32814053
Intra RNF40 O75150 HTT Homo sapiens P42858
Y2H Pooling
32814053
Intra RNF40 O75150 HTT Homo sapiens P42858
Y2H Array
32814053
Intra RNF40 O75150 AMOTL2 Homo sapiens Q9Y2J4
Y2H Prey Pooling
32296183
Intra RNF40 O75150 AMOTL2 Homo sapiens Q9Y2J4
Validated Y2H
32296183
Intra RNF40 O75150 AMOTL2 Homo sapiens Q9Y2J4
Y2H Array
32296183
Intra RNF40 O75150 ZCCHC12 Homo sapiens Q6PEW1
Validated Y2H
32296183
Intra RNF40 O75150 ZCCHC12 Homo sapiens Q6PEW1
Y2H Array
32296183
Intra RNF40 O75150 ZCCHC12 Homo sapiens Q6PEW1
Y2H Prey Pooling
32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Testicular Germ Cell Cancer

Germ Cell Tumor Of Testis

Testicular Germ Cell Tumor

Testicular Germ Cell Neoplasm

Testicular Malignant Germ Cell Tumor

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Felis catus RNF40 VGNC VGNC:64703
Bos taurus RNF40 VGNC VGNC:34066
Macaca mulatta RNF40 VGNC VGNC:76745
Canis familiaris RNF40 VGNC VGNC:45669
Mus musculus RNF40 MGD MGI:2142048
Rattus norvegicus RNF40 RGD RGD:628638