1. Gene
  2. PUF60 - poly(U) binding splicing factor 60 Gene

PUF60 - poly(U) binding splicing factor 60 Gene

中文名称:poly (U) 结合剪接因子 60

种属: Homo sapiens

同用名: FIR; VRJS; RoBPI; SIAHBP1

基因 ID: 22827 | 基因类型: protein coding

关于 PUF60

Cytogenetic location: 8q24.3 Genomic coordinates (GRCh38): 8:143,816,344-143,829,315 (from NCBI)

This gene has 32 transcripts (splice variants), 1 gene allele, 265 orthologues, 24 paralogues and is associated with 5 phenotypes. Ubiquitous expression in brain (RPKM 18.5), testis (RPKM 17.6) and 25 other tissues.

功能概要

该基因编码一种核酸结合蛋白,该蛋白在多种核过程中发挥作用,包括前体 mRNA 剪接和转录调控。编码的蛋白质与远上游 DNA 元件 (FUSE) 和骨髓细胞瘤癌基因 (MYC) 启动子处的 FUSE 结合蛋白形成复合物。该复合物通过核心-TFIIH 基础转录因子抑制 MYC 转录。已经观察到该基因编码多种亚型的可变剪接转录物变体。[RefSeq 提供,2012 年 8 月]

This gene encodes a nucleic acid-binding protein that plays a role in a variety of nuclear processes, including pre-mRNA splicing and transcriptional regulation. The encoded protein forms a complex with the far upstream DNA element (FUSE) and FUSE-binding protein at the myelocytomatosis oncogene (MYC) promoter. This complex represses MYC transcription through the core-TFIIH basal transcription factor. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Aug 2012]

PUF60 基因产物(11)

mRNA Protein Name
NM_001136033.3 NP_001129505.1 poly(U)-binding-splicing factor PUF60 isoform c
NM_001271096.2 NP_001258025.1 poly(U)-binding-splicing factor PUF60 isoform d
NM_001271097.2 NP_001258026.1 poly(U)-binding-splicing factor PUF60 isoform e
NM_001271098.2 NP_001258027.1 poly(U)-binding-splicing factor PUF60 isoform f
NM_001271099.2 NP_001258028.1 poly(U)-binding-splicing factor PUF60 isoform g
NM_001271100.2 NP_001258029.1 poly(U)-binding-splicing factor PUF60 isoform h
NM_001362895.2 NP_001349824.1 poly(U)-binding-splicing factor PUF60 isoform i
NM_001362896.2 NP_001349825.1 poly(U)-binding-splicing factor PUF60 isoform i
NM_001362897.2 NP_001349826.1 poly(U)-binding-splicing factor PUF60 isoform j
NM_014281.5 NP_055096.2 poly(U)-binding-splicing factor PUF60 isoform b
NM_078480.3 NP_510965.1 poly(U)-binding-splicing factor PUF60 isoform a
基因本体论
  • 分子功能
分子功能 GO 注释 逻辑证据 参考文献 来源
enables identical protein binding IPI
IPI: 通过物理相互作用推断
16189514 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
16169070 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PUF60 蛋白结构

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (131 - 201)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (228 - 297)

  • 0
  • 100
  • 200
  • 300
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  • 500
  • 559 a.a.
蛋白主名 其他名称

poly(U)-binding-splicing factor PUF60

FBP interacting repressor

PUF60 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PUF60 Q9UHX1 UBE2I Homo sapiens Q7KZS0
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 UBE2I Homo sapiens Q7KZS0
Y2H Array
25416956
种属内
PUF60 Q9UHX1 SRSF11 Homo sapiens Q05519
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 SRSF11 Homo sapiens Q05519
Anti Bait CoIP
17353931
种属内
PUF60 Q9UHX1 SRSF11 Homo sapiens Q05519
Y2H Array
25416956
种属内
PUF60 Q9UHX1 SRSF11 Homo sapiens Q05519
Anti Tag CoIP
33961781
种属内
PUF60 Q9UHX1 SRSF11 Homo sapiens Q05519
MAPPIT
25416956
种属内
PUF60 Q9UHX1 U2AF2 Homo sapiens P26368
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 U2AF2 Homo sapiens P26368
Y2H
22365833
种属内
PUF60 Q9UHX1 U2AF2 Homo sapiens P26368
Y2H Array
25416956
种属内
PUF60 Q9UHX1 SAP30BP Homo sapiens Q9UHR5
Lumier
32814053
种属内
PUF60 Q9UHX1 U2AF2 Homo sapiens P26368
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 U2AF2 Homo sapiens P26368
Anti Bait CoIP
17353931
种属内
PUF60 Q9UHX1 SAP30BP Homo sapiens Q9UHR5
Y2H
18255255
种属内
PUF60 Q9UHX1 SAP30BP Homo sapiens Q9UHR5
Y2H
21516116
种属内
PUF60 Q9UHX1 ARGLU1 Homo sapiens Q9NWB6
Anti Tag CoIP
33961781
种属内
PUF60 Q9UHX1 CCNC Homo sapiens P24863
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 CCNC Homo sapiens P24863
Y2H Array
25416956
种属内
PUF60 Q9UHX1 CCNC Homo sapiens P24863
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 ARL8A Homo sapiens Q96BM9
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 MED28 Homo sapiens Q9H204
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 MED28 Homo sapiens Q9H204
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 IQCN Homo sapiens Q9H0B3
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 IQCN Homo sapiens Q9H0B3
Y2H Array
25416956
种属内
PUF60 Q9UHX1 ZG16 Homo sapiens O60844
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 ZG16 Homo sapiens O60844
Y2H Array
25416956
种属内
PUF60 Q9UHX1 SIAH1 Homo sapiens Q8IUQ4
Y2H
21516116
种属内
PUF60 Q9UHX1 SIAH1 Homo sapiens Q8IUQ4
Y2H Array
25416956
种属内
PUF60 Q9UHX1 BORCS5 Homo sapiens Q969J3
Y2H Pooling
16189514
种属内
PUF60 Q9UHX1 KHDC4 Homo sapiens Q7Z7F0
Y2H Prey Pooling
25416956
种属内
PUF60 Q9UHX1 KHDC4 Homo sapiens Q7Z7F0
Validated Y2H
25416956
种属内
PUF60 Q9UHX1 KHDC4 Homo sapiens Q7Z7F0
Y2H Array
25416956
种属内
PUF60 Q9UHX1 CACNA1A Homo sapiens O00555
Y2H
21078624
种属内
PUF60 Q9UHX1 CACNA1A Homo sapiens O00555
Pull Down
21078624
种属内
PUF60 Q9UHX1 PCBP1 Homo sapiens Q15365
Y2H
16713569
种属内
PUF60 Q9UHX1 RAD23B Homo sapiens P54727
Validated Y2H
25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Verheij Syndrome

Chromosome 8q24.3 Deletion Syndrome

8q24.3 Microdeletion Syndrome

VRJS

Del(8)(Q24.3)

Deletion 8q24.3

Monosomy 8q24.3

Intellectual Disability-Cardiac Anomalies-Short Stature-Joint Laxity Syndrome

Neurodevelopmental Disorder With Hypotonia And Variable Intellectual And Behavioral Abnormalities

NEDHIB

Xeroderma Pigmentosum, Complementation Group B

Xeroderma Pigmentosum Group B

Xeroderma Pigmentosum, Group B

XPB

Xpbc

Xp Group B

Xp, Group B

Xeroderma Pigmentosum Complementation Group B

XP-B

Xeroderma Pigmentosum Group B With Cockayne Syndrome

Xeroderma Pigmentosum Ii

Xp2

Xp-B/Cs

Charge Syndrome

Charge Association

Hall-Hittner Syndrome

Charge Association--Coloboma, Heart Anomaly, Choanal Atresia, Retardation, Genital And Ear Anomalies

Hhs

Coloboma, Heart Anomaly, Choanal Atresia, Restriction Of Growth And Development, Genital And Ear Anomalies

Coloboma-Heart Defects-Atresia Choanae-Retardation Of Growth And Development-Genitourinary Problems-Ear Abnormalities Syndrome

CHARGES

Tarp Syndrome

TARPS

Pierre Robin Syndrome With Congenital Heart Malformation And Clubfoot

Pierre Robin Sequence-Congenital Heart Defect-Talipes Syndrome

Pierre Robin Syndrome-Congenital Heart Defect-Talipes Syndrome

Talipes Equinovarus-Atrial Septal Defect-Robin Sequence-Persistence Of The Left Superior Vena Cava Syndrome

Talipes Equinovarus, Atrial Septal Defect, Robin Sequence, And Persistence Of Left Superior Vena Cava

Pierre Robin Sequence - Congenital Heart Defect - Talipes

Pierre Robin Syndrome - Congenital Heart Defect - Talipes

Talipes Equinovarus - Atrial Septal Defect - Robin Sequence - Persistence Of The Left Superior Vena Cava

Talipes Equinovarus Atrial Septal Defect Robin Sequence And Persistence Of Left Superior Vena Cava

Optic Nerve Hypoplasia, Bilateral

Optic Nerve Hypoplasia

Bilateral Optic Nerve Hypoplasia

Optic Nerve Hypoplasia, Familial Bilateral

Familial Bilateral Optic Nerve Hypoplasia

Isolated Optic Nerve Hypoplasia/Aplasia

Optic Nerve Aplasia, Bilateral

Onh

BONH

Bilateral Optic Nerve Aplasia

Hypoplasia, Optic Nerve, Bilateral

Developmental And Epileptic Encephalopathy 1

Epileptic Encephalopathy, Early Infantile, 1

Infantile Epileptic-Dyskinetic Encephalopathy

DEE1

Eiee1

Issx1

Xmesid

X-Linked Infantile Spasm Syndrome 1

X-Linked Infantile Spasm Syndrome

X-Linked Spasticity-Intellectual Disability-Epilepsy Syndrome

Developmental And Epileptic Encephalopathy, 1

Infantile Epileptic Dyskinetic Encephalopathy

Infantile Spasm Syndrome, X-Linked 1

West Syndrome, X-Linked

Ohtahara Syndrome, X-Linked

Early Infantile Epileptic Encephalopathy 1

Early Infantile Epileptic Encephalopathy-1

Issx

X-Linked Ohtahara Syndrome

X-Linked West Syndrome

Infantile Spasm Syndrome X-Linked 1

Myoclonic Epilepsy X-Linked With Intellectual Disability And Spasticity

Ohtahara Syndrome X-Linked

West Syndrome X-Linked

Encephalopathy, Epileptic, Early Infantile, Type 1

Coloboma Of Macula

Coloboma

Congenital Ocular Coloboma

Microphthalmia, Isolated, With Coloboma

Agenesis Of Macula

Hereditary Macular Coloboma

Ocular Coloboma

Coloboma Of Eye

Macular Coloboma

Uveoretinal Coloboma

Microcephaly

Microencephaly

Microcephalus

Microcephalic

Nanocephaly

Congenital Microcephaly

Brain Hypoplasia

Brain Nondevelopment

Cephalic Hypoplasia

Undeveloped Cerebrum

Undeveloped Brain

Micrencephalon

Micrencephaly

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Macaca mulatta PUF60 VGNC VGNC:84106
Felis catus PUF60 VGNC VGNC:81707
Bos taurus PUF60 VGNC VGNC:53878
Rattus norvegicus PUF60 RGD RGD:621674
Mus musculus PUF60 MGD MGI:1915209
Canis familiaris PUF60 VGNC VGNC:51779