1. Gene
  2. PSPC1 - paraspeckle component 1 Gene

PSPC1 - paraspeckle component 1 Gene

中文名称:副啄木鸟成分 1

种属: Homo sapiens

同用名: PSP1

基因 ID: 55269 | 基因类型: protein coding

关于 PSPC1

Cytogenetic location: 13q12.11 Genomic coordinates (GRCh38): 13:19,671,205-19,782,945 (from NCBI)

This gene has 8 transcripts (splice variants), 205 orthologues and 7 paralogues. Ubiquitous expression in testis (RPKM 5.7), bone marrow (RPKM 5.4) and 25 other tissues.

功能概要

该基因编码一种核仁蛋白,该蛋白定位于靠近剪接斑点 (称为副啄木鸟) 的点状亚核结构。这些副啄木鸟由 RNA 蛋白质结构组成,包括非编码 RNA、NEAT1/Men epsilon/beta 和果蝇行为人类剪接蛋白家族,其中包括该基因的产物以及 P54NRB/NONO 和 PSF/SFPQ 蛋白质。副啄木鸟可能通过 RNA 核保留机制控制基因表达。由该基因编码的蛋白质存在于转录活跃细胞的副啄木鸟中,但当 RNA 聚合酶 II 转录受到抑制或处于末期时,它定位于核仁外围的独特帽状结构。该基因的可变剪接导致多个转录变体。已经确定了一个相关的假基因,它也位于 13 号染色体上。[RefSeq 提供,2011 年 8 月]

This gene encodes a nucleolar protein that localizes to punctate subnuclear structures that occur close to splicing speckles, known as paraspeckles. These paraspeckles are composed of RNA-protein structures that include a non-coding RNA, NEAT1/Men epsilon/beta, and the Drosophila Behavior Human Splicing family of proteins, which include the product of this gene and the P54NRB/NONO and PSF/SFPQ proteins. Paraspeckles may function in the control of gene expression via an RNA nuclear retention mechanism. The protein encoded by this gene is found in paraspeckles in transcriptionally active cells, but it localizes to unique cap structures at the nucleolar periphery when RNA polymerase II transcription is inhibited, or during telophase. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene, which is also located on chromosome 13, has been identified. [provided by RefSeq, Aug 2011]

PSPC1 基因产物(4)

mRNA Protein Name
NM_001042414.4 NP_001035879.1 paraspeckle component 1 isoform 1
NM_001354908.2 NP_001341837.1 paraspeckle component 1 isoform 2
NM_001354909.2 NP_001341838.1 paraspeckle component 1 isoform 1
NM_001363660.2 NP_001350589.1 paraspeckle component 1 isoform 3
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables RNA binding IDA
IDA: 通过直接分析推断
22416126 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
16148043 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in activation of innate immune response IDA
IDA: 通过直接分析推断
28712728 GOA
involved in non-membrane-bounded organelle assembly IDA
IDA: 通过直接分析推断
22416126 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
is active in paraspeckles IDA
IDA: 通过直接分析推断
11790299 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

PSPC1 蛋白结构

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (84 - 148)

RRM_1

RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (158 - 216)

NOPS

NOPS: NOPS (NUC059) domain (229 - 280)

  • 0
  • 100
  • 200
  • 300
  • 400
  • 523 a.a.
蛋白主名 其他名称

paraspeckle component 1

paraspeckle protein 1

PSPC1 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Anti Tag CoIP
16148043
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Y2H Prey Pooling
25416956
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Anti Bait CoIP
16148043
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Anti Tag CoIP
35271311
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Y2H Array
25416956
种属内
PSPC1 Q8WXF1 NONO Homo sapiens Q15233
Validated Y2H
25416956
种属内
PSPC1 Q8WXF1 SFPQ Homo sapiens P23246
Anti Tag CoIP
35271311
种属内
PSPC1 Q8WXF1 KRT31 Homo sapiens Q15323
Y2H Prey Pooling
25416956
种属内
PSPC1 Q8WXF1 KRT31 Homo sapiens Q15323
Validated Y2H
25416956
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Rattus norvegicus PSPC1 RGD RGD:1310122
Mus musculus PSPC1 MGD MGI:1913895
Felis catus PSPC1 VGNC VGNC:64417
Bos taurus PSPC1 VGNC VGNC:33482
Macaca mulatta PSPC1 VGNC VGNC:76293