1. Gene
  2. RFC5 - replication factor C subunit 5 Gene

RFC5 - replication factor C subunit 5 Gene

中文名称:复制因子 C 亚基 5

种属: Homo sapiens

同用名: RFC36

基因 ID: 5985 | 基因类型: protein coding

关于 RFC5

Cytogenetic location: 12q24.23 Genomic coordinates (GRCh38): 12:118,016,703-118,041,448 (from NCBI)

This gene has 9 transcripts (splice variants), 212 orthologues and 3 paralogues. Ubiquitous expression in brain (RPKM 10.5), thyroid (RPKM 6.7) and 25 other tissues.

功能概要

该基因编码复制因子 C 复合体的最小亚基,它由五个不同的亚基 (140、40、38、37 和 36 kDa) 组成,是 DNA 复制所必需的。该亚基与增殖细胞核抗原的 C 末端区域相互作用,需要在 S 期打开增殖细胞核抗原并将其加载到 DNA 上。它是 AAA+ (与各种细胞活动相关的 ATP 酶) ATP 酶家族的成员,并与具有 DNA 依赖性 ATP 酶活性的 38 和 40 kDa 亚基形成核心复合物。已在 9 号染色体上鉴定出一个相关的假基因。可变剪接导致多个转录本变体。[RefSeq 提供,2016 年 11 月]

This gene encodes the smallest subunit of the replication factor C complex, which consists of five distinct subunits (140, 40, 38, 37, and 36 kDa) and is required for DNA replication. This subunit interacts with the C-terminal region of proliferating cell nuclear antigen and is required to open and load proliferating cell nuclear antigen onto DNA during S phase. It is a member of the AAA+ (ATPases associated with various cellular activities) ATPase family and forms a core complex with the 38 and 40 kDa subunits that possesses DNA-dependent ATPase activity. A related pseudogene has been identified on chromosome 9. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]

RFC5 基因产物(6)

mRNA Protein Name
NM_001130112.4 NP_001123584.1 replication factor C subunit 5 isoform 3
NM_001130113.3 NP_001123585.1 replication factor C subunit 5 isoform 2
NM_001206801.3 NP_001193730.1 replication factor C subunit 5 isoform 4
NM_001346815.2 NP_001333744.1 replication factor C subunit 5 isoform 5
NM_007370.7 NP_031396.1 replication factor C subunit 5 isoform 1
NM_181578.5 NP_853556.2 replication factor C subunit 5 isoform 2
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
contributes to DNA clamp loader activity IDA
IDA: 通过直接分析推断
12930902 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
9488738 GOA
contributes to single-stranded DNA helicase activity IDA
IDA: 通过直接分析推断
12930902 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in DNA-templated DNA replication IDA
IDA: 通过直接分析推断
9488738 GOA
involved in positive regulation of DNA-directed DNA polymerase activity IDA
IDA: 通过直接分析推断
12930902 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
part of Ctf18 RFC-like complex IDA
IDA: 通过直接分析推断
12930902 GOA
part of DNA replication factor C complex IDA
IDA: 通过直接分析推断
9488738 GOA
part of DNA replication factor C complex IPI
IPI: 通过物理相互作用推断
9488738 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

RFC5 蛋白结构

AAA

AAA: ATPase family associated with various cellular activities (AAA) (56 - 173)

Rep_fac_C

Rep_fac_C: Replication factor C C-terminal domain (241 - 329)

  • 0
  • 100
  • 200
  • 300
  • 340 a.a.
蛋白主名 其他名称

replication factor C subunit 5

A1 36 kDa subunit

RFC5 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra RFC5 P40937 PPP1R16B Homo sapiens Q96T49
Y2H Array
32296183
Intra RFC5 P40937 PPP1R16B Homo sapiens Q96T49
Validated Y2H
32296183
Intra RFC5 P40937 PPP1R16B Homo sapiens Q96T49
Y2H Prey Pooling
32296183
Intra RFC5 P40937 KRT34 Homo sapiens O76011
Y2H Prey Pooling
32296183
Intra RFC5 P40937 KRT34 Homo sapiens O76011
Y2H Array
32296183
Intra RFC5 P40937 LMO3 Homo sapiens Q8TAP4-4
Validated Y2H
32296183
Intra RFC5 P40937 LMO3 Homo sapiens Q8TAP4-4
Y2H Prey Pooling
32296183
Intra RFC5 P40937 LMO3 Homo sapiens Q8TAP4-4
Y2H Array
32296183
Intra RFC5 P40937 CIMIP2B Homo sapiens A8MTA8-2
Y2H Array
32296183
Intra RFC5 P40937 CIMIP2B Homo sapiens A8MTA8-2
Y2H Prey Pooling
32296183
Intra RFC5 P40937 ZNF19 Homo sapiens P17023
Y2H Array
32296183
Intra RFC5 P40937 ZNF19 Homo sapiens P17023
Y2H Prey Pooling
32296183
Intra RFC5 P40937 TRIM38 Homo sapiens O00635
Y2H Array
32296183
Intra RFC5 P40937 TRIM38 Homo sapiens O00635
Y2H Prey Pooling
32296183
Intra RFC5 P40937 TSNAX Homo sapiens Q99598
Y2H Array
32296183
Intra RFC5 P40937 TSNAX Homo sapiens Q99598
Validated Y2H
32296183
Intra RFC5 P40937 TSNAX Homo sapiens Q99598
Y2H Prey Pooling
32296183
Intra RFC5 P40937 N4BP3 Homo sapiens O15049
Y2H Array
32296183
Intra RFC5 P40937 N4BP3 Homo sapiens O15049
Y2H Prey Pooling
32296183
Intra RFC5 P40937 BLZF1 Homo sapiens Q9H2G9
Validated Y2H
32296183
Intra RFC5 P40937 BLZF1 Homo sapiens Q9H2G9
Y2H Prey Pooling
32296183
Intra RFC5 P40937 BLZF1 Homo sapiens Q9H2G9
Y2H Array
32296183
Intra RFC5 P40937 XAF1 Homo sapiens Q6GPH4
Y2H Prey Pooling
32296183
Intra RFC5 P40937 XAF1 Homo sapiens Q6GPH4
Validated Y2H
32296183
Intra RFC5 P40937 XAF1 Homo sapiens Q6GPH4
Y2H Array
32296183
Intra RFC5 P40937 EXOSC8 Homo sapiens Q96B26
Validated Y2H
32296183
Intra RFC5 P40937 EXOSC8 Homo sapiens Q96B26
Y2H Array
32296183
Intra RFC5 P40937 EXOSC8 Homo sapiens Q96B26
Y2H Prey Pooling
32296183
Intra RFC5 P40937 CCNC Homo sapiens P24863
Y2H Prey Pooling
32296183
Intra RFC5 P40937 CCNC Homo sapiens P24863
Y2H Array
32296183
Intra RFC5 P40937 MEAF6 Homo sapiens Q9HAF1
Y2H Prey Pooling
32296183
Intra RFC5 P40937 MEAF6 Homo sapiens Q9HAF1
Validated Y2H
32296183
Intra RFC5 P40937 MEAF6 Homo sapiens Q9HAF1
Y2H Array
32296183
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Anti Tag CoIP
33961781
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Anti Tag CoIP
28514442
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Validated Y2H
25416956
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Y2H Prey Pooling
32296183
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Y2H Prey Pooling
25416956
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Y2H Array
25416956
Intra RFC5 P40937 RFC4 Homo sapiens P35249
Y2H Array
32296183
Intra RFC5 P40937 BIRC2 Homo sapiens Q13490
Y2H Prey Pooling
32296183
Intra RFC5 P40937 BIRC2 Homo sapiens Q13490
Validated Y2H
32296183
Intra RFC5 P40937 BIRC2 Homo sapiens Q13490
Y2H Array
32296183
Intra RFC5 P40937 XIAP Homo sapiens P98170
Y2H Prey Pooling
32296183
Intra RFC5 P40937 XIAP Homo sapiens P98170
Validated Y2H
32296183
Intra RFC5 P40937 XIAP Homo sapiens P98170
Y2H Array
25416956
Intra RFC5 P40937 XIAP Homo sapiens P98170
Y2H Array
32296183
Intra RFC5 P40937 XIAP Homo sapiens P98170
Y2H Array
31515488
Intra RFC5 P40937 DDIT4L Homo sapiens Q96D03
Y2H Array
32296183
Intra RFC5 P40937 DDIT4L Homo sapiens Q96D03
Y2H Prey Pooling
32296183
Intra RFC5 P40937 DDIT4L Homo sapiens Q96D03
Validated Y2H
32296183
Intra RFC5 P40937 ZNF426 Homo sapiens Q9BUY5
Validated Y2H
32296183
Intra RFC5 P40937 ZNF426 Homo sapiens Q9BUY5
Y2H Array
32296183
Intra RFC5 P40937 ZNF426 Homo sapiens Q9BUY5
Y2H Prey Pooling
32296183
Intra RFC5 P40937 TASOR2 Homo sapiens Q5VWN6
Y2H Prey Pooling
32296183
Intra RFC5 P40937 TASOR2 Homo sapiens Q5VWN6
Validated Y2H
32296183
Intra RFC5 P40937 TASOR2 Homo sapiens Q5VWN6
Y2H Array
32296183
Intra RFC5 P40937 NAB2 Homo sapiens Q15742
Y2H Array
32296183
Intra RFC5 P40937 NAB2 Homo sapiens Q15742
Validated Y2H
25416956
Intra RFC5 P40937 NAB2 Homo sapiens Q15742
Y2H Prey Pooling
32296183
Intra RFC5 P40937 NAB2 Homo sapiens Q15742
Validated Y2H
32296183
Intra RFC5 P40937 NAB2 Homo sapiens Q15742
Y2H Array
25416956
Intra RFC5 P40937 NR5A1 Homo sapiens Q13285
Y2H Array
32296183
Intra RFC5 P40937 NR5A1 Homo sapiens Q13285
Y2H Prey Pooling
32296183
Intra RFC5 P40937 NR5A1 Homo sapiens Q13285
Validated Y2H
32296183
Intra RFC5 P40937 ARID5A Homo sapiens Q03989
Y2H Prey Pooling
32296183
Intra RFC5 P40937 ARID5A Homo sapiens Q03989
Y2H Array
32296183
Intra RFC5 P40937 ARID5A Homo sapiens Q03989
Validated Y2H
32296183
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Macaca mulatta RFC5 VGNC VGNC:76904
Rattus norvegicus RFC5 RGD RGD:1309280
Mus musculus RFC5 MGD MGI:1919401
Felis catus RFC5 VGNC VGNC:69298
Canis familiaris RFC5 VGNC VGNC:45496
Bos taurus RFC5 VGNC VGNC:33889