1. Gene
  2. SDCBP2 - syndecan binding protein 2 Gene

SDCBP2 - syndecan binding protein 2 Gene

中文名称:聚糖结合蛋白 2

种属: Homo sapiens

同用名: ST2; ST-2; SITAC; SITAC18

基因 ID: 27111 | 基因类型: protein coding

关于 SDCBP2

Cytogenetic location: 20p13 Genomic coordinates (GRCh38): 20:1,309,909-1,329,139 (from NCBI)

This gene has 6 transcripts (splice variants), 210 orthologues and 4 paralogues. Biased expression in duodenum (RPKM 54.3), small intestine (RPKM 53.5) and 8 other tissues.

功能概要

该基因编码的蛋白质包含两个 II 类 PDZ 结构域。 PDZ 结构域通过结合跨膜蛋白的细胞质 C 末端促进蛋白质-蛋白质相互作用,而含有 PDZ 的蛋白质介导细胞信号传导和蛋白质复合物的组织。编码的蛋白质与磷脂酰肌醇 4、5-二磷酸 (PIP2) 结合,并在核 PIP2 组织和细胞分裂中发挥作用。已经观察到该基因编码多种亚型的可变剪接转录物变体。该基因与上游 FKBP1A (FK506 结合蛋白 1A,12kDa) 基因之间也存在通读转录,如 GeneID:100528031 所示。[RefSeq 提供,2011 年 9 月]

The protein encoded by this gene contains two class II PDZ domains. PDZ domains facilitate protein-protein interactions by binding to the cytoplasmic C-terminus of transmembrane proteins, and PDZ-containing proteins mediate cell signaling and the organization of protein complexes. The encoded protein binds to phosphatidylinositol 4, 5-bisphosphate (PIP2) and plays a role in nuclear PIP2 organization and cell division. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Read-through transcription also exists between this gene and the upstream FKBP1A (FK506 binding protein 1A, 12kDa) gene, as represented in GeneID:100528031. [provided by RefSeq, Sep 2011]

SDCBP2 基因产物(3)

mRNA Protein Name
NM_001199784.2 NP_001186713.1 syntenin-2 isoform a
NM_015685.6 NP_056500.2 syntenin-2 isoform b
NM_080489.5 NP_536737.3 syntenin-2 isoform a
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables identical protein binding IPI
IPI: 通过物理相互作用推断
25416956 GOA
enables phosphatidylinositol-4,5-bisphosphate binding IDA
IDA: 通过直接分析推断
15961997 GOA
enables protein binding IPI
IPI: 通过物理相互作用推断
11102519 GOA
enables protein heterodimerization activity IPI
IPI: 通过物理相互作用推断
11152476 GOA
enables protein homodimerization activity IDA
IDA: 通过直接分析推断
11152476 GOA
生物过程 GO 注释 逻辑证据 参考文献 来源
involved in cell population proliferation IMP
IMP: 通过突变表型推断
15961997 GOA
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in cytoplasm IDA
IDA: 通过直接分析推断
11152476 GOA
located in nuclear speck IDA
IDA: 通过直接分析推断
15961997 GOA
located in nucleolus IDA
IDA: 通过直接分析推断
15961997 GOA
located in plasma membrane IDA
IDA: 通过直接分析推断
15961997 GOA
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

SDCBP2 蛋白结构

PDZ

PDZ: PDZ domain (Also known as DHR or GLGF) (109 - 184)

PDZ

PDZ: PDZ domain (Also known as DHR or GLGF) (193 - 263)

  • 0
  • 100
  • 200
  • 292 a.a.
蛋白主名 其他名称

syntenin-2

syndecan binding protein (syntenin) 2

SDCBP2 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
Intra SDCBP2 Q9H190 FAM9B Homo sapiens Q8IZU0
Validated Y2H
25416956
Intra SDCBP2 Q9H190 FAM9B Homo sapiens Q8IZU0
Y2H Array
25416956
Intra SDCBP2 Q9H190 rnps1 Homo sapiens D3DU92
Validated Y2H
25416956
Intra SDCBP2 Q9H190 rnps1 Homo sapiens D3DU92
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 NKAPD1 Homo sapiens Q6ZUT1-2
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 NKAPD1 Homo sapiens Q6ZUT1-2
Validated Y2H
25416956
Intra SDCBP2 Q9H190 TNP1 Homo sapiens P09430
Y2H Array
25416956
Intra SDCBP2 Q9H190 FAM133A Homo sapiens Q8N9E0
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 FAM133A Homo sapiens Q8N9E0
BFG-2H
27107012
Intra SDCBP2 Q9H190 FAM133A Homo sapiens Q8N9E0
Y2H Array
25416956
Intra SDCBP2 Q9H190 FAM133A Homo sapiens Q8N9E0
Validated Y2H
27107012
Intra SDCBP2 Q9H190 SREK1IP1 Homo sapiens Q8N9Q2
Validated Y2H
25416956
Intra SDCBP2 Q9H190 LGALS14 Homo sapiens Q8TCE9
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 LGALS14 Homo sapiens Q8TCE9
Y2H Array
25416956
Intra SDCBP2 Q9H190 ARF4 Homo sapiens P18085
Y2H Array
25416956
Intra SDCBP2 Q9H190 TCP11L1 Homo sapiens Q9NUJ3
Validated Y2H
32296183
Intra SDCBP2 Q9H190 YTHDC1 Homo sapiens Q96MU7
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 RPL22 Homo sapiens P35268
Validated Y2H
27107012
Intra SDCBP2 Q9H190 NKAPD1 Homo sapiens Q6ZUT1
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 PRPF40A Homo sapiens O75400-2
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 PRPF40A Homo sapiens O75400-2
Y2H Array
25416956
Intra SDCBP2 Q9H190 ZCCHC10 Homo sapiens Q8TBK6
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 ZCCHC10 Homo sapiens Q8TBK6
Validated Y2H
25416956
Intra SDCBP2 Q9H190 ZRSR2 Homo sapiens Q15696
Validated Y2H
25416956
Intra SDCBP2 Q9H190 NPM2 Homo sapiens Q86SE8
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 NPM2 Homo sapiens Q86SE8
Validated Y2H
25416956
Intra SDCBP2 Q9H190 LYAR Homo sapiens Q9NX58
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 LYAR Homo sapiens Q9NX58
Y2H Array
31515488
Intra SDCBP2 Q9H190 LYAR Homo sapiens Q9NX58
Validated Y2H
32296183
Intra SDCBP2 Q9H190 CRCT1 Homo sapiens Q9UGL9
Validated Y2H
32296183
Intra SDCBP2 Q9H190 TM4SF1 Homo sapiens P30408
Y2H
11102519
Intra SDCBP2 Q9H190 TM4SF1 Homo sapiens P30408
Confocal
11102519
Intra SDCBP2 Q9H190 ADAP1 Homo sapiens O75689
Validated Y2H
25416956
Intra SDCBP2 Q9H190 ADAP1 Homo sapiens O75689
Y2H Array
25416956
Intra SDCBP2 Q9H190 LGALS2 Homo sapiens P05162
Validated Y2H
25416956
Intra SDCBP2 Q9H190 NFU1 Homo sapiens Q9UMS0
Validated Y2H
32296183
Intra SDCBP2 Q9H190 PHC1 Homo sapiens P78364
Y2H Array
32296183
Intra SDCBP2 Q9H190 FBXO28 Homo sapiens Q9NVF7
Validated Y2H
32296183
Intra SDCBP2 Q9H190 FBXO28 Homo sapiens Q9NVF7
Y2H Array
25416956
Intra SDCBP2 Q9H190 TIFA Homo sapiens Q96CG3
Y2H Pooling
16189514
Intra SDCBP2 Q9H190 TIFA Homo sapiens Q96CG3
Validated Y2H
27107012
Intra SDCBP2 Q9H190 PRR13 Homo sapiens Q9NZ81
Validated Y2H
32296183
Intra SDCBP2 Q9H190 PRR13 Homo sapiens Q9NZ81
Y2H Pooling
16189514
Intra SDCBP2 Q9H190 PRR13 Homo sapiens Q9NZ81
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 ZCCHC17 Homo sapiens Q9NP64
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 ZCCHC17 Homo sapiens Q9NP64
Validated Y2H
32296183
Intra SDCBP2 Q9H190 CT45A3 Homo sapiens Q8NHU0
Y2H Prey Pooling
25416956
Intra SDCBP2 Q9H190 ZCCHC17 Homo sapiens Q9NP64
Y2H Pooling
16189514
Intra SDCBP2 Q9H190 CT45A3 Homo sapiens Q8NHU0
Y2H Array
25416956
Intra SDCBP2 Q9H190 ZCCHC17 Homo sapiens Q9NP64
Validated Y2H
25416956
Intra SDCBP2 Q9H190 CT45A3 Homo sapiens Q8NHU0
Y2H
21516116
Intra SDCBP2 Q9H190 MMTAG2 Homo sapiens Q9BU76
Y2H Pooling
16189514
Intra SDCBP2 Q9H190 ZNF581 Homo sapiens Q9P0T4
Y2H Array
25416956
Intra SDCBP2 Q9H190 EIF1AD Homo sapiens Q8N9N8
Validated Y2H
25416956
Intra SDCBP2 Q9H190 EIF1AD Homo sapiens Q8N9N8
Y2H Array
25416956
Intra SDCBP2 Q9H190 FAM13C Homo sapiens Q8NE31
Y2H Array
25416956
Intra SDCBP2 Q9H190 CT45A5 Homo sapiens Q6NSH3
Y2H Array
25416956
Cross SDCBP2 Q9H190 Tgfa Rattus norvegicus P01134
Y2H
11102519
种属间: 跨种属相互作用 种属内: 同种属相互作用

关联疾病

疾病名称 别名
Lissencephaly 9 With Complex Brainstem Malformation

LIS9

Posterior-Predominant Lissencephaly-Broad Flat Pons And Medulla-Midline Crossing Defects Syndrome

Epidermodysplasia Verruciformis 1

Epidermodysplasia Verruciformis

Epidermodysplasia Verruciformis, Susceptibility To, 1

Lutz-Lewandowsky Epidermodysplasia Verruciformis

EV1

Lewandowsky-Lutz Syndrome

Ev

疾病名称 别名
Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

Waldenstroem'S Macroglobulinemia

Waldenstroem'S Macroglobulinemia

Macroglobulinemia Of Waldenstrom

Lymphoplasmacytic Lymphoma With Igm Gammopathy

Lymphoplasmacytic Lymphoma

直系同源

种属 基因名 来源 基因 ID
Felis catus SDCBP2 VGNC VGNC:64947
Macaca mulatta SDCBP2 VGNC VGNC:77017
Canis familiaris SDCBP2 VGNC VGNC:45945
Mus musculus SDCBP2 MGD MGI:2385156
Rattus norvegicus SDCBP2 RGD RGD:1307709
Bos taurus SDCBP2 VGNC VGNC:34383