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  2. Hdac6 - histone deacetylase 6 Gene

Hdac6 - histone deacetylase 6 Gene

中文名称:组蛋白脱乙酰酶 6

种属: Mus musculus

同用名: Hd6; Sfc6; Hdac5; mHDA2

基因 ID: 15185 | 基因类型: protein coding

关于 Hdac6

Chromosome X: 7,796,359-7,814,128 reverse strand.GRCm39:CM001013.3

This gene has 10 transcripts (splice variants), 182 orthologues, 10 paralogues and is associated with 10 phenotypes. Ubiquitous expression in genital fat pad adult (RPKM 65.5), whole brain E14.5 (RPKM 26.3) and 27 other tissues.

功能概要

该基因编码的蛋白可启动细胞骨架蛋白结合活性;蛋白质脱乙酰酶活性;和泛素结合活性。参与多个过程,包括肽基丝氨酸磷酸化的正调节;蛋白质去乙酰化;和蛋白质不稳定。作用于多个过程的上游或内部,包括侵略性装配;细胞蛋白质代谢过程;和神经元投射形态发生。位于多个细胞成分中,包括树突;微管细胞骨架;和周核体。部分含蛋白质复合物。以多种结构表达,包括中枢神经系统;早期胚胎;未来的中脑;肠腺;和肺。该基因的人类直系同源物与软骨发育不良有关,伴有扁平椎、独特的短指畸形、脑积水和小眼畸形。与人类 HDAC6(组蛋白脱乙酰酶 6)同源。 [由基因组资源联盟提供,2022 年 4 月]

Enables cytoskeletal protein binding activity; protein deacetylase activity; and ubiquitin binding activity. Involved in several processes, including positive regulation of peptidyl-serine phosphorylation; protein deacetylation; and protein destabilization. Acts upstream of or within several processes, including aggresome assembly; cellular protein metabolic process; and neuron projection morphogenesis. Located in several cellular components, including dendrite; microtubule cytoskeleton; and perikaryon. Part of protein-containing complex. Is expressed in several structures, including central nervous system; early embryo; future midbrain; gut gland; and lung. Human ortholog(s) of this gene implicated in chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia. Orthologous to human HDAC6 (histone deacetylase 6). [provided by Alliance of Genome Resources, Apr 2022]

Hdac6 基因产物(7)

mRNA Protein Name
NM_001411606.1 NP_001398535.1 histone deacetylase 6 isoform 2
NM_001130416.2 NP_001123888.1 histone deacetylase 6 isoform 2
NM_001411608.1 NP_001398537.1 histone deacetylase 6 isoform 3
NM_010413.4 NP_034543.3 histone deacetylase 6 isoform 2
NM_001411612.1 NP_001398541.1 histone deacetylase 6 isoform 4
NM_001411604.1 NP_001398533.1 histone deacetylase 6 isoform 1
NM_001411607.1 NP_001398536.1 histone deacetylase 6 isoform 2
基因本体论
  • 分子功能
  • 生物过程
  • 细胞组分
分子功能 GO 注释 逻辑证据 参考文献 来源
enables beta-tubulin binding IDA
IDA: 通过直接分析推断
12606581 MGI
enables histone deacetylase activity IDA
IDA: 通过直接分析推断
9891014 MGI
enables histone deacetylase activity IMP
IMP: 通过突变表型推断
24882211 MGI
enables microtubule binding IDA
IDA: 通过直接分析推断
19893491 MGI
enables protein binding IPI
IPI: 通过物理相互作用推断
11689694 MGI
enables tau protein binding IPI
IPI: 通过物理相互作用推断
19457097 MGI
enables tubulin deacetylase activity IDA
IDA: 通过直接分析推断
12606581 MGI
enables tubulin deacetylase activity IGI
IGI: 通过遗传相互作用推断
27430620 MGI
enables tubulin deacetylase activity IMP
IMP: 通过突变表型推断
19457097 MGI
enables ubiquitin binding IDA
IDA: 通过直接分析推断
11689694 MGI
生物过程 GO 注释 逻辑证据 参考文献 来源
acts upstream of or within Hsp90 deacetylation IMP
IMP: 通过突变表型推断
17785525 MGI
acts upstream of or within actin filament organization IMP
IMP: 通过突变表型推断
28255013 MGI
acts upstream of or within aggresome assembly IGI
IGI: 通过遗传相互作用推断
16810319 MGI
acts upstream of or within cellular response to misfolded protein IMP
IMP: 通过突变表型推断
17785525 MGI
acts upstream of or within collateral sprouting IMP
IMP: 通过突变表型推断
24113571 MGI
acts upstream of or within dendritic spine morphogenesis IMP
IMP: 通过突变表型推断
24113571 MGI
acts upstream of or within erythrocyte enucleation IMP
IMP: 通过突变表型推断
28255013 MGI
involved in mitochondrion localization IMP
IMP: 通过突变表型推断
20457763 MGI
acts upstream of or within negative regulation of microtubule depolymerization IDA
IDA: 通过直接分析推断
12486003 MGI
involved in peptidyl-lysine deacetylation IMP
IMP: 通过突变表型推断
23962722 MGI
involved in positive regulation of peptidyl-serine phosphorylation IMP
IMP: 通过突变表型推断
23962722 MGI
involved in positive regulation of type 2 mitophagy IGI
IGI: 通过遗传相互作用推断
20457763 MGI
acts upstream of or within protein deacetylation IDA
IDA: 通过直接分析推断
12486003 MGI
acts upstream of or within protein deacylation IMP
IMP: 通过突变表型推断
28255013 MGI
involved in protein destabilization IMP
IMP: 通过突变表型推断
24882211 MGI
acts upstream of or within protein polyubiquitination IDA
IDA: 通过直接分析推断
11689694 MGI
acts upstream of or within protein-containing complex disassembly IGI
IGI: 通过遗传相互作用推断
17785525 MGI
acts upstream of or within regulation of establishment of protein localization IMP
IMP: 通过突变表型推断
22792322 MGI
acts upstream of or within regulation of fat cell differentiation IMP
IMP: 通过突变表型推断
23126280 MGI
involved in tubulin deacetylation IDA
IDA: 通过直接分析推断
19893491 MGI
acts upstream of or within tubulin deacetylation IMP
IMP: 通过突变表型推断
12606581 MGI
acts upstream of or within ubiquitin-dependent protein catabolic process IGI
IGI: 通过遗传相互作用推断
16810319 MGI
acts upstream of or within ubiquitin-dependent protein catabolic process IMP
IMP: 通过突变表型推断
16810319 MGI
acts upstream of or within ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IMP
IMP: 通过突变表型推断
17785525 MGI
细胞组分 GO 注释 逻辑证据 参考文献 来源
located in axon IDA
IDA: 通过直接分析推断
16933150 MGI
located in cytoplasm IDA
IDA: 通过直接分析推断
11689694 MGI
located in cytosol IDA
IDA: 通过直接分析推断
19893491 MGI
located in dendrite IDA
IDA: 通过直接分析推断
16933150 MGI
located in microtubule cytoskeleton IDA
IDA: 通过直接分析推断
12606581 MGI
located in neuron projection IDA
IDA: 通过直接分析推断
24113571 MGI
located in neuronal cell body IDA
IDA: 通过直接分析推断
24113571 MGI
located in nucleus IDA
IDA: 通过直接分析推断
19893491 MGI
located in perikaryon IDA
IDA: 通过直接分析推断
16933150 MGI
part of protein-containing complex IPI
IPI: 通过物理相互作用推断
17785525 MGI
EXP:通过实验结果推断 IDA:通过直接分析推断 IPI:通过物理相互作用推断 IMP:通过突变表型推断 IGI:通过遗传相互作用推断 IEP:通过表达模式推断

Hdac6 蛋白结构

Arginase_HDAC

Arginase_HDAC: cl17011 (97 - 433)

HDAC6-dom2

HDAC6-dom2: cd10003 (483 - 833)

zf-UBP

zf-UBP: pfam02148 (1066 - 1128)

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  • 1149 a.a.
蛋白主名 其他名称

histone deacetylase 6

histone deacetylase 5

histone deacetylase mHDA2

scurfy candidate 6

tubulin-lysine deacetylase HDAC6

Hdac6 蛋白互作信息

分类
蛋白名称 蛋白编号 互作蛋白 互作蛋白种属 互作蛋白编号 实验方法 参考文献
种属内
Hdac6 Q9Z2V5 Cyld Mus musculus Q80TQ2 19893491
种属内
Hdac6 Q9Z2V5 Cyld Mus musculus Q80TQ2 19893491
种属间
Hdac6 Q9Z2V5 GRK2 Bos taurus P21146 22193721
种属间
Hdac6 Q9Z2V5 ubiq_chick Gallus gallus P62973 25342804
种属间
Hdac6 Q9Z2V5 Ccdc141 Rattus norvegicus D3ZEY0 27737934
种属间
Hdac6 Q9Z2V5 Ccdc141 Rattus norvegicus D3ZEY0
Y2H
27737934
种属间: 跨种属相互作用 种属内: 同种属相互作用

直系同源

种属 基因名 来源 基因 ID
Homo sapiens Hdac6 NCBI NCBI:10013